Locus 8019

Sequence ID 3L_DroMel_CAF1
Location 21,129,390 – 21,129,510
Length 120
Max. P 0.975783
window13099

overview

Window 9

Location 21,129,390 – 21,129,510
Length 120
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 69.85
Mean single sequence MFE -30.48
Consensus MFE -15.64
Energy contribution -15.75
Covariance contribution 0.11
Combinations/Pair 1.07
Mean z-score -2.09
Structure conservation index 0.51
SVM decision value 1.76
SVM RNA-class probability 0.975783
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 21129390 120 + 23771897
AAACGGGAACGGCAAUAAUGGCGGAAGCAGUCGAUACAGGUGACGUGCUGCGAUGCGCAGGGGAAAACCAACACGGUAUCACUGCGAACAUAAUAAGGUGAUUAUAGCAGAAUAAAAUUA
...((....))((.(((((.((....(((((.(((((.(....)((((((((...)))))((.....))..))).))))))))))...(.......))).))))).))............ ( -34.30)
>DroVir_CAF1 20908 103 + 1
AGACGCGAACGGCAAUAGUCGCGAAAGCAAUCGAUGCAGGUGACGUGCUGCGAGGCGCACGGAAAGACCAGAACCGUGUCGCUACAAAGAGAUAGAGC--GUAAA---------------
..((((...(((((...(((((....)).(((......)))))).))))).(.(((((((((...........))))).)))).)...........))--))...--------------- ( -34.40)
>DroGri_CAF1 20587 100 + 1
AGUCGCGAGCGACAAUAGUCGCGGAAGCAAUCGAUGCAGGUGACGUGCUGCGAGGCGCACGGAAAAACCAAAACUGUUUCGCUACAAA---AUAUAAC--GCAGA---------------
....((((((((.((((((.((....))..........(((..(((((.((...))))))).....)))...))))))))))).....---......)--))...--------------- ( -29.20)
>DroSec_CAF1 591 120 + 1
AAACGGGAACGGCAAUAAUGGCGGAAGCAGUCGAUGCAGGUGACGUGCUGCGAUGCGCAGGGGAAAACCAAAACGGUAUCACUGCGAACAUAAAAUGCGGAUUAUAGUAAAAUAAAAUUA
...((....))(((...(((((....)).((((..((((....).)))..)))).(((((..((..(((.....))).)).)))))..)))....)))...................... ( -30.00)
>DroMoj_CAF1 21668 100 + 1
AGACGUGAGCGACAAUAGUCGCGGAAGCAAUCGAUACAGGUGACGUGCUGUGAGGCGCAGGGAAAGACCAGUACGGUUUCACUGCAAAGAGGUCG-----GUAAG---------------
....((..(((((....)))))....)).((((((...(....).(((.(((((((((.((......)).))...))))))).))).....))))-----))...--------------- ( -30.50)
>DroPer_CAF1 9355 92 + 1
AGACGCGAACGGCAAUAUUGCCGAAAACAGUCAAUACAGGUGACGUGCUGGGCAGCGCAGGGGAAGACCAAAACAGUUUCACUGCAAAGAAA----------------------------
.(((.....(((((....)))))......)))......(((((.(((((....))))).((......)).........))))).........---------------------------- ( -24.50)
>consensus
AGACGCGAACGGCAAUAGUCGCGGAAGCAAUCGAUACAGGUGACGUGCUGCGAGGCGCAGGGAAAAACCAAAACGGUUUCACUGCAAAGAGAUAAAGC__GUAAA_______________
...((....)).........((....))..........(((((.((((......))))..((.....)).........)))))..................................... (-15.64 = -15.75 +   0.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:04:01 2006