Locus 8015

Sequence ID 3L_DroMel_CAF1
Location 21,127,130 – 21,127,246
Length 116
Max. P 0.969955
window13093

overview

Window 3

Location 21,127,130 – 21,127,246
Length 116
Sequences 5
Columns 116
Reading direction forward
Mean pairwise identity 98.62
Mean single sequence MFE -44.90
Consensus MFE -44.90
Energy contribution -44.78
Covariance contribution -0.12
Combinations/Pair 1.06
Mean z-score -1.59
Structure conservation index 1.00
SVM decision value 1.65
SVM RNA-class probability 0.969955
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 21127130 116 + 23771897
CUCAGUUCGGUGCGGAGUCCGCAGUUACGUAUACGCAGUGUGUGUGCGACGCGCGCUAAAGUCCAACGUAGACUGAAACGCGAUACGUGGGCGCGCUGCCAUUUAUACACCGAAGG
.....((((((((((...))))......(((((.(((((((((.((((...((((....((((.......))))....))))...)))).)))))))))....))))))))))).. ( -46.70)
>DroSec_CAF1 177843 116 + 1
CUCAGUUCGGUGCGGAGUCCGCCGUUACGUAUACGCAGUGUGUGUGCGACGCGCGCUAAAGUCCAACGUAGACUGAAACGCGAUACGUGGGCGCGCUGUCAUUUAUACACCGAAGG
.....((((((((((...))))......(((((.(((((((((.((((...((((....((((.......))))....))))...)))).)))))))))....))))))))))).. ( -44.20)
>DroSim_CAF1 89536 116 + 1
CUCAGUUCGGUGCGGAGUCCGCCGUUACGUAUACGCAGUGUGUGUGCGACGCGCGCUAAAGUCCAACGUAGACUGAAACGCGAUACGUGGGCGCGCUGCCAUUUAUACACCGAAGG
.....((((((((((...))))......(((((.(((((((((.((((...((((....((((.......))))....))))...)))).)))))))))....))))))))))).. ( -45.80)
>DroEre_CAF1 100244 116 + 1
CUCAGUUCGGUGCGGAGUCCGCCGUUACGUAUACGCAGUGUGUGUGCGACGCGCGCUAAAGUCCAACGUAGACUGAAACGCGAUACGUGGGCGCACUGCCAUUUAUACACCGAAGG
.....((((((((((...))))......(((((.(((((((((.((((...((((....((((.......))))....))))...)))).)))))))))....))))))))))).. ( -46.20)
>DroYak_CAF1 71190 116 + 1
CUCAGUUCGGUGCGGAGUCCGCCGUUACGUAUACGCAGUGUGUGUGCGACGCGCGCUAAAGUCCAACGUAGACUGAAACGCGAUACGUGGGCGCGCUGCCAUUUAUACACCAAAGG
........(((((((...))))......(((((.(((((((((.((((...((((....((((.......))))....))))...)))).)))))))))....))))))))..... ( -41.60)
>consensus
CUCAGUUCGGUGCGGAGUCCGCCGUUACGUAUACGCAGUGUGUGUGCGACGCGCGCUAAAGUCCAACGUAGACUGAAACGCGAUACGUGGGCGCGCUGCCAUUUAUACACCGAAGG
.....((((((((((...))))......(((((.(((((((((.((((...((((....((((.......))))....))))...)))).)))))))))....))))))))))).. (-44.90 = -44.78 +  -0.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:03:55 2006