Locus 8014

Sequence ID 3L_DroMel_CAF1
Location 21,126,161 – 21,126,273
Length 112
Max. P 0.651948
window13092

overview

Window 2

Location 21,126,161 – 21,126,273
Length 112
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 93.53
Mean single sequence MFE -36.72
Consensus MFE -31.32
Energy contribution -31.92
Covariance contribution 0.60
Combinations/Pair 1.06
Mean z-score -1.32
Structure conservation index 0.85
SVM decision value 0.25
SVM RNA-class probability 0.651948
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 21126161 112 - 23771897
GCUCCUUUUUCGGUUACUGCCG---CUGCUGGACGCAGAGGAGGAAAACAAA-AA-AUGUACAGAAACAGUGCAAGAGCUGAGGCGAAAC---GACUCGGGCUGCUGUUUUUAUUGAUUU
.(((((....((((....))))---((((.....)))))))))(((((((..-..-.(((((.......)))))..(((((((.((...)---).))).))))..)))))))........ ( -30.70)
>DroSec_CAF1 176865 117 - 1
GCUCCUUCUUCGGUUACUGCUGCUGCUGCUGGCCGCAGAGGAGGAAAACAAA-AA-A-GUACAGAAACAGUGCAAGAGCUGAGGCGAAACCCCGUCUCGGGCUGCUGUUUUUAUUGAUUU
..(((((((((((((((.((....)).).))))))..)))))))).......-..-.-....(((((((((...((..((((((((......)))))))).)))))))))))........ ( -39.30)
>DroSim_CAF1 88559 117 - 1
GCUCCUUCUUCGGUUACUGCUGCUGCUGCUGGCCGCAGAGGAGGAAAACAAA-AA-A-GUACAGAAACAGUGCAAGAGCUGAGGCGAAACCCCGUCUCGGGCUGCUGUUUUUAUUGAUUU
..(((((((((((((((.((....)).).))))))..)))))))).......-..-.-....(((((((((...((..((((((((......)))))))).)))))))))))........ ( -39.30)
>DroEre_CAF1 99260 119 - 1
GCUCCUUCUUCGGUUACUGCCGCUACUUCUGUACGCAGAGGAGGCAAACAAA-AAAAUGUACAGAAACAGUGCAAGAGCUGAGGCGAAACCCCGUCUCGGGCUGCUGUUUUUAUUGAUUU
((..(((((..(((....)))(((((....))).)))))))..)).......-.........(((((((((...((..((((((((......)))))))).)))))))))))........ ( -36.50)
>DroYak_CAF1 70210 120 - 1
GCUCCUUCUUCGGUUACUGCCGCUGCUUCUGGACGCAGAGGAGGAAAACAAAAAAAAUGUACAGAAACAGUGCAAGAGCUGAGGCGAAACCCCGUCUCGGGCUGCUGUUUUUAUUGAUUU
..(((((((.((((....))))((((........))))))))))).................(((((((((...((..((((((((......)))))))).)))))))))))........ ( -37.80)
>consensus
GCUCCUUCUUCGGUUACUGCCGCUGCUGCUGGACGCAGAGGAGGAAAACAAA_AA_AUGUACAGAAACAGUGCAAGAGCUGAGGCGAAACCCCGUCUCGGGCUGCUGUUUUUAUUGAUUU
..(((((((.((((....))))...((((.....))))))))))).................(((((((((...((..((((((((......)))))))).)))))))))))........ (-31.32 = -31.92 +   0.60)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:03:54 2006