| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 21,125,185 – 21,125,305 |
| Length | 120 |
| Max. P | 0.522776 |
| Location | 21,125,185 – 21,125,305 |
|---|---|
| Length | 120 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 82.91 |
| Mean single sequence MFE | -19.37 |
| Consensus MFE | -12.87 |
| Energy contribution | -13.21 |
| Covariance contribution | 0.34 |
| Combinations/Pair | 1.11 |
| Mean z-score | -1.78 |
| Structure conservation index | 0.66 |
| SVM decision value | -0.02 |
| SVM RNA-class probability | 0.522776 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 21125185 120 - 23771897 UAAUUGCUAUACAUAUAUUCAGGAGUCAUGAAUGCUAAAUAUGCCCCUAAAUAUUACAACUUCAUGGUAAAUAUAAUAUUUUAAGUAUUUAGUAUUCAGUUUAAUUUACCGCAAGAAUGU ..............((((((.((((...((((((((((((((......((((((((..(((....))).....))))))))...)))))))))))))).......)).))....)))))) ( -20.10) >DroSec_CAF1 175910 117 - 1 UAAUAUGAC--UACAUAUUCAUGACGCCU-AAUGCUGAAUAUGACCCUUAAAAUUACAACUGCAUGGUGAAUAUAAUAUAAUAAGUAUUUAUUAUUCAGUUUAAUUUACCGCAAAAAUGU .........--..((((((((....((..-...)))))))))).......((((((.(((((.(((((((((((..........))))))))))).)))))))))))............. ( -21.00) >DroSim_CAF1 87582 110 - 1 UA---------CAUAUAUUCAUGACUCCU-AAUGCUGAAUAUGCCCCUAAAUAUUACAACUGCAUAGUAAAUAUAAUAUAACAAGUAUUUAUUAUUCAGUUUAAUUUACCGCAAAAAUGU .(---------((((((((((.(.(....-...)))))))))((........((((.(((((.(((((((((((..........))))))))))).))))))))).....))....)))) ( -17.02) >consensus UAAU_______CAUAUAUUCAUGACUCCU_AAUGCUGAAUAUGCCCCUAAAUAUUACAACUGCAUGGUAAAUAUAAUAUAAUAAGUAUUUAUUAUUCAGUUUAAUUUACCGCAAAAAUGU .............((((((((..............)))))))).........((((.(((((.(((((((((((..........))))))))))).)))))))))............... (-12.87 = -13.21 + 0.34)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:03:51 2006