Locus 8011

Sequence ID 3L_DroMel_CAF1
Location 21,124,558 – 21,124,678
Length 120
Max. P 0.782015
window13088

overview

Window 8

Location 21,124,558 – 21,124,678
Length 120
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 98.83
Mean single sequence MFE -41.60
Consensus MFE -39.76
Energy contribution -39.76
Covariance contribution 0.00
Combinations/Pair 1.00
Mean z-score -1.37
Structure conservation index 0.96
SVM decision value 0.56
SVM RNA-class probability 0.782015
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 21124558 120 + 23771897
GGUCCCUGGCCUGGCGGGUGGGUGCAUCUCUUGAUGGGCCAUGCGCAAAAUUCCGUUUGUUUUGCACUCACGCACAGGCAGCUGUGGCACCACAACAACGAAACAAACAGCCACUCAACU
(((..(((((((((((.((((((.((((....)))).))).)))(((((((.......))))))).....))).))))).(.((((....)))).)...........)))..)))..... ( -40.50)
>DroSec_CAF1 175255 120 + 1
GGUCCCCGGCCUGGCGGGUGGGUGCAUCUCUUGAUGGGCCAUGCGCAAAAUUCCGUUUGUUUUGCACUCACGCACAGGCAGCUGUGGCACCACAACAACGAAACAAACAGCCACUCAACU
(((.....((((((((.((((((.((((....)))).))).)))(((((((.......))))))).....))).))))).(.((((....)))).).............)))........ ( -39.90)
>DroSim_CAF1 86962 120 + 1
GGUCCCCGGCCUGGCGGGUGGGUGCAUCUCUUGAUGGGCCAUGCGCAAAAUUCCGUUUGUUUUGCACUCACGCACAGGCAGCUGUGGCACCACAACAACGAAACAAACAGCCACUCAACU
(((.....((((((((.((((((.((((....)))).))).)))(((((((.......))))))).....))).))))).(.((((....)))).).............)))........ ( -39.90)
>DroEre_CAF1 97709 120 + 1
GGUCCCUGGCCUGGCGGGUGGGUGCAUCUCUUGAUGGGCCAUGCGCAAAAUUCCGUUUGUUUUGCACUCACGCACAGGCAGCUGUGGCACCACAACAACGAAACAAACAGCCACUCAACU
(((..(((((((((((.((((((.((((....)))).))).)))(((((((.......))))))).....))).))))).(.((((....)))).)...........)))..)))..... ( -40.50)
>DroYak_CAF1 68662 120 + 1
GGUCCCUGGCCUGGCGGGUGGGUGCAUCUCUUGAUGGGCCAUGCGCAAAAUUCCGUUUGUUUUGCACUCACGCACAGGCUGCUGUGGCACCACAGCAACGAAACAAACAGCCACUCAACU
(((..(((((((((((.((((((.((((....)))).))).)))(((((((.......))))))).....))).)))))(((((((....)))))))..........)))..)))..... ( -47.20)
>consensus
GGUCCCUGGCCUGGCGGGUGGGUGCAUCUCUUGAUGGGCCAUGCGCAAAAUUCCGUUUGUUUUGCACUCACGCACAGGCAGCUGUGGCACCACAACAACGAAACAAACAGCCACUCAACU
(((.....((((((((.((((((.((((....)))).))).)))(((((((.......))))))).....))).))))).(.((((....)))).).............)))........ (-39.76 = -39.76 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:03:50 2006