Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 21,124,361 – 21,124,481 |
Length | 120 |
Max. P | 0.932830 |
Location | 21,124,361 – 21,124,481 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 95.50 |
Mean single sequence MFE | -35.08 |
Consensus MFE | -31.70 |
Energy contribution | -31.94 |
Covariance contribution | 0.24 |
Combinations/Pair | 1.03 |
Mean z-score | -1.50 |
Structure conservation index | 0.90 |
SVM decision value | 1.22 |
SVM RNA-class probability | 0.932830 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 21124361 120 - 23771897 CCCAUUUCCUAGCCAUCUUCAGUCAGCAACCGCAUUUCGUGCAUCAUAACAUCGCUGGCAAUUAUUCGGCGAGUUGCUGGCUCUCAUUAGCAUGUAUGGAACGUCUGGAUUGCACUCAGU ...........((.(((...((((((((((.((((...)))).........(((((((.......))))))))))))))))).....(((.((((.....)))))))))).))....... ( -32.40) >DroSec_CAF1 175055 120 - 1 CCCAUUUCCCAGCCAUCUUCAGUCGGCAACCGCAUUUCGUGCACCAUAACAUCGCUGGCAAUUAUUCGGCGAGUUGCUGGCUCUCAUUAGCAUGUAUGGAAUGUCUGGAUUGCACUCAGU ........((((((..(....)..)))....((((((((((((.((((((.(((((((.......))))))))))).))(((......))).)))))))))))).)))............ ( -33.70) >DroSim_CAF1 86765 120 - 1 CCCAUUUCCCAGCCAUCUUCAGUCGGCAACCGCAUUUCGUGCACCAUAACAUCGCUGGCAAUUAUUCGGCGAGUUGCUGGCUCUCAUUAGCAUGUAUGGAAUGUCUGGAUUGCACUCAGU ........((((((..(....)..)))....((((((((((((.((((((.(((((((.......))))))))))).))(((......))).)))))))))))).)))............ ( -33.70) >DroEre_CAF1 97526 120 - 1 CCCAUUUCCCAGCAGUCUUCAGUCGGCAACCGCAUUUCGUGCAUCAUAGCAUCGCUGGCAAUUAUUCGGCGAGUAGCUGGCUCUCAUUAGCAUGUAUGGAAUGUCUGGAUUGCACUCAGU ...........((((((..(((..(....).(((((((((((((..((((.(((((((.......)))))))...))))(((......)))))))))))))))))))))))))....... ( -37.90) >DroYak_CAF1 68485 120 - 1 CCCAUAAACCAGCAGUCUUCAGUCGGCAACCGCAUUUCGUGCAUCAUAACAUCGCUGGCAAUUAUUCGGCGAGUUGCUGGUUCUCAUUAGCAUGUAUGGAAUGUCUGGAUUGCACUCAGU ...........((((((..(((..(....).(((((((((((((...(((.(((((((.......))))))))))((((((....))))))))))))))))))))))))))))....... ( -37.70) >consensus CCCAUUUCCCAGCCAUCUUCAGUCGGCAACCGCAUUUCGUGCAUCAUAACAUCGCUGGCAAUUAUUCGGCGAGUUGCUGGCUCUCAUUAGCAUGUAUGGAAUGUCUGGAUUGCACUCAGU .........................((((((((((((((((((....(((.(((((((.......))))))))))(((((......))))).))))))))))))..)).))))....... (-31.70 = -31.94 + 0.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:03:49 2006