Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 2,404,181 – 2,404,272 |
Length | 91 |
Max. P | 0.580562 |
Location | 2,404,181 – 2,404,272 |
---|---|
Length | 91 |
Sequences | 6 |
Columns | 104 |
Reading direction | reverse |
Mean pairwise identity | 80.00 |
Mean single sequence MFE | -18.55 |
Consensus MFE | -9.75 |
Energy contribution | -9.17 |
Covariance contribution | -0.58 |
Combinations/Pair | 1.29 |
Mean z-score | -2.03 |
Structure conservation index | 0.53 |
SVM decision value | 0.09 |
SVM RNA-class probability | 0.580562 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 2404181 91 - 23771897 UGGCGACGGGAGAAUUUCGUAAUUAAGCGAAGC-------------AGAAAAAAUCACCAGAGUGAGAUUUAUUAAGCGUAAGCAAGAAAACAAAAACGCAUAA ..(((.........((((((......)))))).-------------...(((..((((....))))..))).....((....)).............))).... ( -15.10) >DroSec_CAF1 31886 91 - 1 UGGCGACGGAAGAAUUCCGUAAUUAAGCGAAGC-------------AGAAAAAAUCACCAGCGUGAGAUUUAUUAAGCGUAAGCAAGAAAACAAAAACGCAUAA .....(((((.....)))))......(((....-------------...(((..((((....))))..))).....((....)).............))).... ( -17.00) >DroSim_CAF1 31459 91 - 1 AGGCGACUGGAGAAUUCCGUAAUUAAGCGAAGC-------------AGAAAAAAUCACCAGCGUGAGAUUUAUUAAGCGUAAGCAAGAAAACAAAAACGCAUAA ..(((.((((.......(((......)))....-------------.((.....)).))))(....).........((....)).............))).... ( -14.70) >DroEre_CAF1 31053 91 - 1 UGGCGACAGGAAGAUUCCGUAAUUAAGCGGAGC-------------AGAAAAACUCACAAGAGUGAGAUUUAUUAAGCGUAAGCAAGAAAACAAAAACGCAUAA ..(((.......(.((((((......)))))))-------------.......(((((....))))).........((....)).............))).... ( -21.20) >DroYak_CAF1 31728 91 - 1 UGGCGACAGGAAGAUUUCGCAAUUAAGCGAAGC-------------AGAAAAACUCACAAGAGUGAGAUUUAUUAAGCGUAAGCAAGAAAACCAAAACGCAUAA ..(((...((..(.((((((......)))))))-------------.......(((((....))))).........((....)).......))....))).... ( -21.30) >DroAna_CAF1 26893 103 - 1 UUUGGCCCGGAAAAUUCCGCAAUUAAGAGCAGUAGGUGGAGCAACCAAACAAACUCUGAAGAAAGAGAUUUAUGGGGCGAAGCCGAAGGAACA-AAACGAAUGA ((((..(((((....)))((........))....(((...((..(((......((((......)))).....))).))...)))...))..))-))........ ( -22.00) >consensus UGGCGACAGGAAAAUUCCGUAAUUAAGCGAAGC_____________AGAAAAAAUCACAAGAGUGAGAUUUAUUAAGCGUAAGCAAGAAAACAAAAACGCAUAA ..(((......(((((.(((......))).........................((((....))))))))).....((....)).............))).... ( -9.75 = -9.17 + -0.58)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:51:32 2006