Locus 8006

Sequence ID 3L_DroMel_CAF1
Location 21,122,613 – 21,122,733
Length 120
Max. P 0.875777
window13074

overview

Window 4

Location 21,122,613 – 21,122,733
Length 120
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 94.33
Mean single sequence MFE -50.74
Consensus MFE -46.20
Energy contribution -47.32
Covariance contribution 1.12
Combinations/Pair 1.08
Mean z-score -1.35
Structure conservation index 0.91
SVM decision value 0.89
SVM RNA-class probability 0.875777
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 21122613 120 - 23771897
GUGCCCUAUCACUGUCCGGCGGAUGCGCGGGACUACGAGGAGGAGGAGCACCAGCCACCGGUGACGGCGGAAGUCAGAAGGGCGGACACUCCGCUCGAUAUUACCGGUAAGUUGACAUUU
(((((((.((...((((.(((....))).))))......))..))).))))((((.((((((((.(((....)))....((((((.....))))))....))))))))..))))...... ( -54.30)
>DroSec_CAF1 173326 120 - 1
GUGCCCUAUCACUGCCCGGCGGAUGCGCGGGAGUACGAAGAGGAGGAGCACCAGCCACCGGUGACGGCGGAAGUCAGGAGGGCGGACACUCCGCUCGAUAUUACCGGUAAGUUGUCAGCU
(((((((.(((((.((((((....)).))))))).....))..))).))))((((.((((((((.(((....)))....((((((.....))))))....))))))))..))))...... ( -50.80)
>DroSim_CAF1 85018 120 - 1
GUGCCCUAUCACUGUCCGGCGGAUGCGCGGGACUACGAAGAGGAGGAGCACCAGCCACCGGUGACGGCGGAAGUCAGGAGGGCGGACACUCCGCUCGAUAUUACCGGUAAGUUGUCAGCU
(((((((.((...((((.(((....))).))))......))..))).))))((((.((((((((.(((....)))....((((((.....))))))....))))))))..))))...... ( -52.70)
>DroEre_CAF1 95744 120 - 1
GUGCCCUAUCACUGUCCGGCGGAUGCGCGGGACUACGAGGAGGAGGAGCACCAGCCCCCGGUGACGUCGGAAGCGAGAAGGGUGGACACUCCGCUCGAUAUUACCGGUAAGUUGUCAGCU
(((((((.((...((((.(((....))).))))......))..))).))))((((..(((((((..(((....).....((((((.....))))))))..)))))))...))))...... ( -48.20)
>DroYak_CAF1 66701 120 - 1
GUGCCCUAUCACUGUCCGGCGGAUGCGCGGGACUACGAGGAGGAGGAGCACCAGCCACCGGUGGCGUCGGAAGUGAGGAAGGCGGACACUCCGCUCGAUAUUGCCGGUAAGUUGUCAGCU
(((((((.((...((((.(((....))).))))......))..))).))))((((.(((((..(..(((...........(((((.....))))))))..)..)))))..))))...... ( -47.70)
>consensus
GUGCCCUAUCACUGUCCGGCGGAUGCGCGGGACUACGAGGAGGAGGAGCACCAGCCACCGGUGACGGCGGAAGUCAGGAGGGCGGACACUCCGCUCGAUAUUACCGGUAAGUUGUCAGCU
(((((((.((...((((.(((....))).))))......))..))).))))((((.((((((((.(((....)))....((((((.....))))))....))))))))..))))...... (-46.20 = -47.32 +   1.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:03:36 2006