Locus 8005

Sequence ID 3L_DroMel_CAF1
Location 21,121,894 – 21,122,013
Length 119
Max. P 0.544087
window13073

overview

Window 3

Location 21,121,894 – 21,122,013
Length 119
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 93.07
Mean single sequence MFE -33.48
Consensus MFE -29.88
Energy contribution -29.84
Covariance contribution -0.04
Combinations/Pair 1.15
Mean z-score -1.14
Structure conservation index 0.89
SVM decision value 0.02
SVM RNA-class probability 0.544087
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 21121894 119 + 23771897
CCACCCGC-UUCUCAUAAAGCCACCCUUUUUGCUGGAAAACGGAAGUAUUUCAGCAGUUAACCAACGCUGAUUGGUUGAGUGUUUGCAAAACGUUGGCUUGUCAGGCUUGUGAAAUAUGU
.(((..((-((..((...(((((.(..(((((((((((.((....)).)))))(((.((((((((......)))))))).)))..)))))).).)))))))..))))..)))........ ( -36.40)
>DroSec_CAF1 172565 119 + 1
CCACCCGC-UCCUCGUAUAGCCACCCUUUCUGCUGGAAAACGGAAGUAUUUCAGAAGUUAACCAACGCUGAUUGGUUGAGUGUUUGCAAAACGUCGGCUUGUCAGGCUUGUGAAAUAUGU
.....(((-.(((.(...((((..........((((((.((....)).)))))).(.((((((((......)))))))).)..............))))...))))...)))........ ( -28.50)
>DroSim_CAF1 84251 118 + 1
CCACCCGC-UCCUCGUAGAGCCACCCU-UCUGCUGGAAAACGGAAGUAUUUCAGCAGUUAACCAACGCUGAUUGGUUGAGUGUUUGCAAAACAUCGGCUUGUCAGGCUUGUGAAAUAUGU
.....(((-.(((....(((((.....-.(((((((((.((....)).)))))))))((((((((......))))))))(((((.....))))).)))))...)))...)))........ ( -37.20)
>DroEre_CAF1 95087 120 + 1
CCACCCCACCUCCCAUAAAGCCACCCUUUUUGUCGGAAAACGGAAGUAUUUCAGCAGUUAACCAACGCUGAUUGGUUGAGUGUUUGCAAAACGUCGGCUUGUCAGGCUUCUGAAAUAUGU
.............(((((((((((...((((((.((((.((....)).))))((((.((((((((......)))))))).)))).)))))).)).))))).((((....))))..)))). ( -31.60)
>DroYak_CAF1 65952 120 + 1
CCACCCGCCCACUCAUAAAGCCACCCUUUUUGUCGGAAAACGGAAGUAUUUCAGCAGUUAACCAACGCUGAUUGGUUGAGUGUUUGCAAAACGUCGGCUUGUCAGGCUUGUGAAAUAUGU
.(((..(((........(((((((...((((((.((((.((....)).))))((((.((((((((......)))))))).)))).)))))).)).)))))....)))..)))........ ( -33.70)
>consensus
CCACCCGC_UCCUCAUAAAGCCACCCUUUUUGCUGGAAAACGGAAGUAUUUCAGCAGUUAACCAACGCUGAUUGGUUGAGUGUUUGCAAAACGUCGGCUUGUCAGGCUUGUGAAAUAUGU
............(((((.((((.......(((((((((.((....)).)))))))))...........((((.((((((.((((.....)))))))))).)))))))))))))....... (-29.88 = -29.84 +  -0.04)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:03:35 2006