Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 21,120,161 – 21,120,281 |
Length | 120 |
Max. P | 0.609715 |
Location | 21,120,161 – 21,120,281 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 85.00 |
Mean single sequence MFE | -39.86 |
Consensus MFE | -32.36 |
Energy contribution | -32.04 |
Covariance contribution | -0.32 |
Combinations/Pair | 1.19 |
Mean z-score | -1.56 |
Structure conservation index | 0.81 |
SVM decision value | 0.15 |
SVM RNA-class probability | 0.609715 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 21120161 120 + 23771897 ACUCUUGGCAACUUGCGAUGAAGUGGGCGCUGUAGGUUUCACCUCAUCAGCGGCCACUGGCGACGUAGCGCUUAUGUCAUCUGAAAAAUAAGUUAAGACUUAAGCUGGAGGAGGCUUUGA .(((((.((.((((((.....(((((.(((((.(((.....)))...))))).))))).)))).)).))(((((.(((..((........))....))).)))))...)))))....... ( -41.10) >DroSec_CAF1 170810 120 + 1 ACGCUUGGCAACUUCUGAUGGAGUGGGCGCUGUGGGCUUCACCUUAUCAGCGGCUACUGGCGACGUGGCGCUUAUGUCAUCUGAGAAAUAAGUUAAGACCUAAGUUGGAGGAGGCUUUGA ...(..(((..((((..((....(((((((((.(((.....)))...)))))(((((.(....))))))((((((.((......)).)))))).....)))).))..))))..)))..). ( -38.60) >DroSim_CAF1 82519 120 + 1 ACGCUUGGCAACUUCUGAUGGAGUGGGCGCUGUGGGUUUCACCUUAUCAGCGGCCACUGGCGACGUGGCGCUUAUGUCAUCUGAAAAAUGAGUUAAGACUUAAGUUUGAGGAGGCUUUGA ...(..(((..((((.((((..((((((((((.(((.....)))...)))).(((((.(....))))))))))))..))))..(((..(((((....)))))..)))))))..)))..). ( -42.00) >DroEre_CAF1 93316 120 + 1 ACGCUUGACAACUUCCGAUGGAGUGGGCGCUGUGGGCUUCACCUUAUCAGCGGCCACUGGCGACGUGGCGCUUAUGUCAUCUGGAAAAUAAGUAAAGAAAUUUGUUGGAGAAGGCUGGGA ..((((..((((((((((((..((((((((((.(((.....)))...)))).(((((.(....))))))))))))..)))).)))).......(((....)))))))....))))..... ( -42.60) >DroYak_CAF1 64216 106 + 1 ACGCUUGACAACUUCCGAUGGAGUGGGCGCUGUGGGUUUCGCCUUAUCAGCGGCCACUGGCGACGUCGCGCUUAUGUCAUCUGGAAAAUAAUUUAAAAAAUAGGUA-------------- ............((((((((((((((.(((((.(((.....)))...))))).))))).(((....))).......))))).))))....................-------------- ( -35.00) >consensus ACGCUUGGCAACUUCCGAUGGAGUGGGCGCUGUGGGUUUCACCUUAUCAGCGGCCACUGGCGACGUGGCGCUUAUGUCAUCUGAAAAAUAAGUUAAGACAUAAGUUGGAGGAGGCUUUGA ...((((((...(((.((((((((((.(((((.(((.....)))...))))).)))))((((......))))....))))).)))......))))))....................... (-32.36 = -32.04 + -0.32)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:03:27 2006