Locus 800

Sequence ID 3L_DroMel_CAF1
Location 2,400,537 – 2,400,653
Length 116
Max. P 0.967309
window1232

overview

Window 2

Location 2,400,537 – 2,400,653
Length 116
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 86.08
Mean single sequence MFE -18.84
Consensus MFE -14.40
Energy contribution -14.36
Covariance contribution -0.04
Combinations/Pair 1.29
Mean z-score -2.49
Structure conservation index 0.76
SVM decision value 1.61
SVM RNA-class probability 0.967309
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 2400537 116 + 23771897
CAUCUAUAAGCACAAAAACCAGUAACCGAAUAAAAACAACUCAUGUGUGAAAUCACAUUCAACUAUAUGUAAGUGCUUAUAUGAUAUCUA----UCCACAAAAGCACUCAUAAAACUGCA
.((((((((((((..............((((....(((.....)))(((....))))))).((.....))..))))))))).))).....----.........(((..........))). ( -18.50)
>DroSec_CAF1 28184 114 + 1
CAUCUAUAAGCACAAAAACCAGUAACCGAAUGAAAACAACUCAUGUGUGAAAUCACAUUCAACUAUA--UAAGUGCUUAUGUGAUAUAUA----UCCACCAAAGCACUUAUAAAACUGCA
.........(((........(((......((((.......))))(((((....)))))...))).((--(((((((((..(((.......----..)))..)))))))))))....))). ( -23.10)
>DroSim_CAF1 27556 114 + 1
UAUCUAUAAGCACAAAAACCAGUAACCGAAUGAAAACAACCCAUGUGUGAAAUCGCAUUCAACUAUA--UAAGUGCUUAUGUGAUAUAUA----UCCAGCAAAGCACUCAUAAAACUGCA
...................((((....(((((......((......)).......))))).....((--(.(((((((.((.(((....)----))))...))))))).)))..)))).. ( -18.42)
>DroEre_CAF1 27299 111 + 1
CAACUAUAUGCACAGAAACCAGUAACCGAGUGAAAACAACUCAUGUGUGAAAUCAUUUUCAGCUUCA--UAGGUGCUUGUAUGAUAUAUA-------ACCACACCACUCAUAAAACUUCA
...((((..((................((((.......)))).....(((((....)))))))...)--)))(((.((((((...)))))-------).))).................. ( -15.60)
>DroYak_CAF1 28049 118 + 1
CAUUUAUAAGCACAAAAACCAGUAACCGAAUGAAAACAACUCAUGUGUGAAAUCACAUUCAACUUUA--UAAGUGCUUAUGUGAUAUAUGUAUAUCCACCACACAGCUCAUAACACUUUA
...((((.(((..................((((.......))))(((((..(((((((...(((...--..)))....)))))))...((......)).))))).))).))))....... ( -18.60)
>consensus
CAUCUAUAAGCACAAAAACCAGUAACCGAAUGAAAACAACUCAUGUGUGAAAUCACAUUCAACUAUA__UAAGUGCUUAUGUGAUAUAUA____UCCACCAAAGCACUCAUAAAACUGCA
.((((((((((((................((((.......))))(((((....)))))..............))))))))).)))................................... (-14.40 = -14.36 +  -0.04) 

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript


Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:51:31 2006