Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 2,400,537 – 2,400,653 |
Length | 116 |
Max. P | 0.967309 |
Location | 2,400,537 – 2,400,653 |
---|---|
Length | 116 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 86.08 |
Mean single sequence MFE | -18.84 |
Consensus MFE | -14.40 |
Energy contribution | -14.36 |
Covariance contribution | -0.04 |
Combinations/Pair | 1.29 |
Mean z-score | -2.49 |
Structure conservation index | 0.76 |
SVM decision value | 1.61 |
SVM RNA-class probability | 0.967309 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 2400537 116 + 23771897 CAUCUAUAAGCACAAAAACCAGUAACCGAAUAAAAACAACUCAUGUGUGAAAUCACAUUCAACUAUAUGUAAGUGCUUAUAUGAUAUCUA----UCCACAAAAGCACUCAUAAAACUGCA .((((((((((((..............((((....(((.....)))(((....))))))).((.....))..))))))))).))).....----.........(((..........))). ( -18.50) >DroSec_CAF1 28184 114 + 1 CAUCUAUAAGCACAAAAACCAGUAACCGAAUGAAAACAACUCAUGUGUGAAAUCACAUUCAACUAUA--UAAGUGCUUAUGUGAUAUAUA----UCCACCAAAGCACUUAUAAAACUGCA .........(((........(((......((((.......))))(((((....)))))...))).((--(((((((((..(((.......----..)))..)))))))))))....))). ( -23.10) >DroSim_CAF1 27556 114 + 1 UAUCUAUAAGCACAAAAACCAGUAACCGAAUGAAAACAACCCAUGUGUGAAAUCGCAUUCAACUAUA--UAAGUGCUUAUGUGAUAUAUA----UCCAGCAAAGCACUCAUAAAACUGCA ...................((((....(((((......((......)).......))))).....((--(.(((((((.((.(((....)----))))...))))))).)))..)))).. ( -18.42) >DroEre_CAF1 27299 111 + 1 CAACUAUAUGCACAGAAACCAGUAACCGAGUGAAAACAACUCAUGUGUGAAAUCAUUUUCAGCUUCA--UAGGUGCUUGUAUGAUAUAUA-------ACCACACCACUCAUAAAACUUCA ...((((..((................((((.......)))).....(((((....)))))))...)--)))(((.((((((...)))))-------).))).................. ( -15.60) >DroYak_CAF1 28049 118 + 1 CAUUUAUAAGCACAAAAACCAGUAACCGAAUGAAAACAACUCAUGUGUGAAAUCACAUUCAACUUUA--UAAGUGCUUAUGUGAUAUAUGUAUAUCCACCACACAGCUCAUAACACUUUA ...((((.(((..................((((.......))))(((((..(((((((...(((...--..)))....)))))))...((......)).))))).))).))))....... ( -18.60) >consensus CAUCUAUAAGCACAAAAACCAGUAACCGAAUGAAAACAACUCAUGUGUGAAAUCACAUUCAACUAUA__UAAGUGCUUAUGUGAUAUAUA____UCCACCAAAGCACUCAUAAAACUGCA .((((((((((((................((((.......))))(((((....)))))..............))))))))).)))................................... (-14.40 = -14.36 + -0.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:51:31 2006