Locus 8

Sequence ID	3L_DroMel_CAF1
Location	37,392 – 37,501
Length	109
Max. P	0.607501

overview

Window 0

Location	37,392 – 37,501
Length	109
Sequences	4
Columns	117
Reading direction	forward
Mean pairwise identity	76.36
Mean single sequence MFE	-25.30
Consensus MFE	-18.25
Energy contribution	-18.18
Covariance contribution	-0.06
Combinations/Pair	1.24
Mean z-score	-1.47
Structure conservation index	0.72
SVM decision value	0.15
SVM RNA-class probability	0.607501
Prediction	RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 37392 109 + 23771897
UUAGUAGUGUUGGAGCAAAACUUUAUUGUUGGAUUGUUUUUAAAUUAGAAACGUAACAAAUAUGGCGAAA-------AACUUGAACGUCGGCCAA-ACGCACUACGCUCUAGCAUUG
....((((((((((((.........((((((...((((((((...))))))))))))))...((((((..-------..........)).)))).-.........)))))))))))) ( -26.20)
>DroVir_CAF1 74051 105 + 1
UGUUGGGUGUUGGAAUAAAACUUUAUUUUGUUGUUGUUUU--------AAUCGUUACAAAUAUGGCAAAUUGUCAUCAACAUGAUGAUGAAUCAAU--A-ACUAUA-ACUAAUAUUU
((((((.....(((((((....)))))))(((((((.(((--------(.((((((.....(((((.....))))).....)))))))))).))))--)-))....-.))))))... ( -21.00)
>DroSec_CAF1 26923 110 + 1
UUAGUAGUGUUGGAGCAAAACUUUAUUGUUGGAUUGUUUUUAAAUUAGAAACGUAACAAAUAUGGCGAGA-------ACCUUGAACGUCGGCCAAUACGCACUACGCUCUAGCAUUG
....((((((((((((.........((((((...((((((((...))))))))))))))...((((..((-------..........)).))))...........)))))))))))) ( -27.00)
>DroSim_CAF1 28519 110 + 1
UUAGUAGUGUUGGAGCAAAACUUUAUUGUUGGAUUGUUUUUAAAUUAGAAACGUAACAAAUAUGGCGAGA-------ACCUUGAACGUCGGCCAAUACGCACUACGCUCUAGCAUUG
....((((((((((((.........((((((...((((((((...))))))))))))))...((((..((-------..........)).))))...........)))))))))))) ( -27.00)
>consensus
UUAGUAGUGUUGGAGCAAAACUUUAUUGUUGGAUUGUUUUUAAAUUAGAAACGUAACAAAUAUGGCGAAA_______AACUUGAACGUCGGCCAAUACGCACUACGCUCUAGCAUUG
....((((((((((((.........((((((...(((((((.....)))))))))))))...((((........................))))...........)))))))))))) (-18.25 = -18.18 +  -0.06)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:29:46 2006