Locus 7997

Sequence ID 3L_DroMel_CAF1
Location 21,117,931 – 21,118,034
Length 103
Max. P 0.995839
window13052

overview

Window 2

Location 21,117,931 – 21,118,034
Length 103
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 85.67
Mean single sequence MFE -25.74
Consensus MFE -22.79
Energy contribution -23.39
Covariance contribution 0.60
Combinations/Pair 1.12
Mean z-score -2.50
Structure conservation index 0.89
SVM decision value 2.62
SVM RNA-class probability 0.995839
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 21117931 103 - 23771897
----------------CUCAAAAAUCGCUUACAGCUCCGUUUCCAAUCGGAAGCCAUUGUUUUUGGGGUUCAAAAUUCCGAUAUCACCCCAAAAAUAAGUA-AGUUAAACAGAGCGAAAA
----------------........((((((........((((((....))))))..(((((((((((((((........))....)))))))))))))...-.........))))))... ( -30.20)
>DroSec_CAF1 168536 120 - 1
GUGAAAGUAAUUAACACUCGAAAAUUGCUUACAGCACCGUUUCCAAUCGGAAGCCAUUGUUUUUGGGGUUCAAAAUUCCGAUAUCACCCCAAAAAUAAGUAAAGUUAAACAGAGCGAAAA
.((.((((((((..........)))))))).))((...((((((....))))))..(((((((((((((((........))....)))))))))))))...............))..... ( -29.60)
>DroSim_CAF1 80243 118 - 1
GUGAAAGUAAUUAACACUCGAAAAUUGCUUACAGCACCGUUUCCAAUCGGAAGCCAUUGUU-UUGGGGUUCAAAAUUCCGAU-UCAGCCCAAAAAUAAGUAAAGUUAAACAGAGCGAAAA
.((.((((((((..........)))))))).))((...((((((....))))))..(((((-((.(((((.((........)-).))))).)))))))...............))..... ( -23.30)
>DroEre_CAF1 91052 120 - 1
GUGAAAGUAAUUAACAUUCAAAAAUCGCAUAGAGAACCGUUUCCGAUUGGAAACCUUUGUUUUGAGGGUUCAAAAUUCGGAUAUCACCCCAAAAAUAAGUAAAGUAAAACAGAGCGAAAA
.((((.((.....)).))))....((((.....(((((((((((....))))))(((......)))))))).......((........)).......................))))... ( -23.70)
>DroYak_CAF1 61932 120 - 1
GUUAAAGUAAUUAACACUCAAAAAUCGCUUUCAGAACCGUUUCCGAUUGAAAACCAUUGUUUUUGGGGUUAAAAAUUCCGAUAUCAUCCCAAAAAUAAGUAAAGUAAAACAGAGCGAAAA
(((((.....))))).........(((((((........((((.....))))....(((((((((((((................)))))))))))))............)))))))... ( -21.89)
>consensus
GUGAAAGUAAUUAACACUCAAAAAUCGCUUACAGCACCGUUUCCAAUCGGAAGCCAUUGUUUUUGGGGUUCAAAAUUCCGAUAUCACCCCAAAAAUAAGUAAAGUUAAACAGAGCGAAAA
........................((((((........((((((....))))))..(((((((((((((................))))))))))))).............))))))... (-22.79 = -23.39 +   0.60)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:03:14 2006