Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 21,116,910 – 21,117,030 |
Length | 120 |
Max. P | 0.854606 |
Location | 21,116,910 – 21,117,030 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 98.67 |
Mean single sequence MFE | -23.28 |
Consensus MFE | -22.90 |
Energy contribution | -23.30 |
Covariance contribution | 0.40 |
Combinations/Pair | 1.00 |
Mean z-score | -1.37 |
Structure conservation index | 0.98 |
SVM decision value | 0.80 |
SVM RNA-class probability | 0.854606 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 21116910 120 - 23771897 UGUGUGGGCUUGUGUAUUUAAAUUAAUUACAAAAAUAGUUCAGUUGUAAGAGCAGAAUCGUAUUAAUAAUAGUAAUUAGAAUUUAGUUGAGCGGAAACGAAAUAAGGAUACAAAGUCGCC ......(((((.(((((((...((((((((.......((((........)))).......(((.....)))))))))))......(((...((....)).)))..))))))))))))... ( -21.10) >DroSec_CAF1 167507 120 - 1 UGUGUGGGUUUGUGUGUUUAAAUUAAUUACAAAAAUAGUUCAGUUGUAAGAGCAGAAUCGUAUUAAUAAUAGUAAUUAGAAUUUAGUUGAGCGGAAACGAAAUAAGGAUACAAAGUCGCC ...((((.(((((((.((((..((((((((.......((((........)))).......(((.....)))))))))))............((....))...)))).))))))).)))). ( -24.90) >DroSim_CAF1 79214 120 - 1 UGUGUGGGUUUGUGUGUUUAAAUUAAUUACAAAAAUAGUUCAGUUGUAAGAGCAGAAUCGUAUUAAUAAUAGUAAUUAGAAUUUAGUUGAGCGGAAACGAAAUAAGGAUACAAAGUCGCC ...((((.(((((((.((((..((((((((.......((((........)))).......(((.....)))))))))))............((....))...)))).))))))).)))). ( -24.90) >DroEre_CAF1 90029 120 - 1 UGUGUGGGUUUGUGUGUUUAAAUUAAUUACAAAAAUAGUUCAGUUGUAAGAGCAGAAUCGUAUUAAUAAUAGUAAUUAGAAUUCAGUUGAGCGGAAACGAAAUAAGGAUACAAAGUCGCC ...((((.(((((((.((((..((((((.........((((........)))).(((((.(((((....)))))....).)))))))))).((....))...)))).))))))).)))). ( -25.20) >DroYak_CAF1 60909 120 - 1 UGUGUGGGUUUGUGUGUUUAAAUUAAUUACAAAAAUAGUUCAGUUGUAAGAGCAGAAUCGUAUUAAUAAUAGUAAUUAGAAUUUAGUUGAGCGGAAACGAAAUAAGGAUACAAAGUAGCC ...((.(.(((((((.((((..((((((((.......((((........)))).......(((.....)))))))))))............((....))...)))).))))))).).)). ( -20.30) >consensus UGUGUGGGUUUGUGUGUUUAAAUUAAUUACAAAAAUAGUUCAGUUGUAAGAGCAGAAUCGUAUUAAUAAUAGUAAUUAGAAUUUAGUUGAGCGGAAACGAAAUAAGGAUACAAAGUCGCC ...((((.(((((((.((((..((((((((.......((((........)))).......(((.....)))))))))))............((....))...)))).))))))).)))). (-22.90 = -23.30 + 0.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:03:13 2006