Locus 7993

Sequence ID 3L_DroMel_CAF1
Location 21,115,337 – 21,115,457
Length 120
Max. P 0.808336
window13044

overview

Window 4

Location 21,115,337 – 21,115,457
Length 120
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 96.92
Mean single sequence MFE -47.58
Consensus MFE -43.24
Energy contribution -43.16
Covariance contribution -0.08
Combinations/Pair 1.08
Mean z-score -1.37
Structure conservation index 0.91
SVM decision value 0.64
SVM RNA-class probability 0.808336
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 21115337 120 + 23771897
AGUCUUCCGUGGAGCAGGAGCUGCUCUUUUCCUCGGAGCUGGACAUUCAGCACAACAUUCAGAAGACGUCGGAGGAGAUCCGGCACUGCUUCGGCGGUCAGUACCAGACGGCGCUGGCGC
.((((((((.((((.(((((...))))))))).))))(((((....)))))............))))((((((.....))))))..(((....)))(((((..((....))..))))).. ( -48.80)
>DroSec_CAF1 165937 120 + 1
AGUCUUCCGUGGAGCAGGAGCUGCUCUUUUCCUCGGAGCUGGACAUUCAGCACAACAUUCAAAAGACGUCGGAGGAGAUCCGGCACUGCUUCGGCGGUCAGUACCAGACGGCGCUGGCGC
.((((((((.((((.(((((...))))))))).))))(((((....)))))............))))((((((.....))))))..(((....)))(((((..((....))..))))).. ( -48.80)
>DroSim_CAF1 77646 120 + 1
AGUCUUCCGUGGAGCAGGAGCUGCUCUUUUCCUCGGAGCUAGACAUUCAGCACAACAUUCAAAAGACGUCGGAGGAGAUCCGGCACUGCUUCGGCGGUCAGUACCAGACGGCGCUGGCGC
.((((((((.((((.(((((...))))))))).))))(((.(.....))))............))))((((((.....))))))..(((....)))(((((..((....))..))))).. ( -45.30)
>DroEre_CAF1 88462 120 + 1
AGUCAUCUGUGGAGCAGGAGCUGCUCUUUUCCUCGGAGCUGGACAUUCAGCAGAACAUUCAGAAGACGUCGGAAGAGAUCCGGCACUGCUUCGGCGGUCAGUAUCAGACGGCGCUGGCGC
.((((.(..((((((((..((((.((((((((.((...(((((..(((....)))..)))))....))..))))))))..)))).))))))))((.(((.......))).))).)))).. ( -45.40)
>DroYak_CAF1 59315 120 + 1
AGUCCUCCGUGGAGCAGGAGCUGCUCUUUUCCUCGGAGCUGGACAUUCAGCACAACAUUCAGAAGACGUCGGAGGAGAUCCGGCACUGCUUCGGAGGUCAGUACCAGACGGCGCUGGCGC
....(((((..((((((..((((....(((((((.(((((((....))))).......((....))..)).)))))))..)))).)))))))))))(((((..((....))..))))).. ( -49.60)
>consensus
AGUCUUCCGUGGAGCAGGAGCUGCUCUUUUCCUCGGAGCUGGACAUUCAGCACAACAUUCAGAAGACGUCGGAGGAGAUCCGGCACUGCUUCGGCGGUCAGUACCAGACGGCGCUGGCGC
.......((((((((((..((((.((((((((.((..(((((....))))).......((....))))..))))))))..)))).))))))).)))(((((..((....))..))))).. (-43.24 = -43.16 +  -0.08)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:03:06 2006