Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 21,115,177 – 21,115,297 |
Length | 120 |
Max. P | 0.500000 |
Location | 21,115,177 – 21,115,297 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 96.92 |
Mean single sequence MFE | -43.20 |
Consensus MFE | -39.88 |
Energy contribution | -40.20 |
Covariance contribution | 0.32 |
Combinations/Pair | 1.05 |
Mean z-score | -1.13 |
Structure conservation index | 0.92 |
SVM decision value | -0.07 |
SVM RNA-class probability | 0.500000 |
Prediction | OTHER |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 21115177 120 - 23771897 GUGGUGGCUCUGAAGCGAGGCAAAUGGACCCACAGAGGGACUUUGCAAAGGCUUGGGACUGCUACUGCUCAAUGGAGAGCUACUAGGCGAAUUGGCACCCGAAUUGCAACUUUGGCUUUG (..((((((((.((((...(((((.(..(((.....))).))))))....)))).)))..)))))..).......(((((((....((((.((((...)))).)))).....))))))). ( -41.10) >DroSec_CAF1 165777 120 - 1 GUGGUGGCUCUGUAGUGAGGCAAAUGGACCCACAGAGGGACUUUGCAAAGGCUUGGGACUGCUACUGCUCAAUGGAGAGCUACUAGGCGAAUUGGCACCCGAAUUGCCACUUUGGCUUUG .((((((((((.((.(((((((((.(..(((.....))).))))))...(((........)))....)))).)).))))))))))(.((((.(((((.......))))).)))).).... ( -43.90) >DroSim_CAF1 77486 120 - 1 GUGGUGGCUCUGCAGUGAGGCAAAUGGACCCACAGAGGGACUUUGCAAAGGCUUAGGACUGCUACUGCUCAAUGGAGAGCUACUAGGCGAAUUGGCACCCGAAUUGCCACUUUGGCUUUG .((((((((((.((.(((((((((.(..(((.....))).))))))...(((........)))....)))).)).))))))))))(.((((.(((((.......))))).)))).).... ( -45.60) >DroEre_CAF1 88302 120 - 1 GUGGUGGCUCUGCAGCGAGGCAAAUGGACCCACAGAGGGACUUUGCAAAGGCUUGGGGCUGCUACUGCUCAGUGGAGAGCUGCUAGGCGAAUUGGCACCCGAAUUGCCACUUUGGCUUUG ((((..((((((.(((...(((((.(..(((.....))).))))))....)))))))))..)))).((((......)))).(((((((((.((((...)))).)))))....)))).... ( -45.00) >DroYak_CAF1 59155 120 - 1 GUGGUGGCUCUGCAGCGAGGCAAAUGGACCCACAGAGGGACUUUGCAAAGGCUUGGGACUGCUACUGCUCAAUGGCGAGCUACUAGGCGAAUUGGCACCCGAAUUGCCACUUUGGCUUUG .(((((((((.((...((((((((.(..(((.....))).))))))...(((........)))....)))....)))))))))))(.((((.(((((.......))))).)))).).... ( -40.40) >consensus GUGGUGGCUCUGCAGCGAGGCAAAUGGACCCACAGAGGGACUUUGCAAAGGCUUGGGACUGCUACUGCUCAAUGGAGAGCUACUAGGCGAAUUGGCACCCGAAUUGCCACUUUGGCUUUG .((((((((((.((..((((((((.(..(((.....))).))))))...(((........)))....)))..)).))))))))))(.((((.(((((.......))))).)))).).... (-39.88 = -40.20 + 0.32)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:03:05 2006