Locus 7990

Sequence ID 3L_DroMel_CAF1
Location 21,113,439 – 21,113,559
Length 120
Max. P 0.799261
window13040

overview

Window 0

Location 21,113,439 – 21,113,559
Length 120
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 94.86
Mean single sequence MFE -36.90
Consensus MFE -34.09
Energy contribution -34.65
Covariance contribution 0.56
Combinations/Pair 1.04
Mean z-score -1.69
Structure conservation index 0.92
SVM decision value 0.61
SVM RNA-class probability 0.799261
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 21113439 120 - 23771897
AUGUCUAAUGUUCCAUAUAUUUGAUCCGCCAGCUCUGGAAAGUGACGCCUGAAAGCCCAAUAGGCGUAUCUGGAAUGGCGGCGUGCAUCGCAGUCUGCAUCGCCAAUGGAUUUUUUUAAG
...........(((((...........((((..((..((.....(((((((.........))))))).))..)).))))((((((((........)))).)))).))))).......... ( -38.10)
>DroSec_CAF1 164045 120 - 1
AUGUCCAAGGUUCCAUAUAUCUGAUCCGCCAGCUCUGGAAAGUGACGCCUAAAAGCCCAAUAGGCGUAUCUGGAAUGGCGGCGUGCAUCGCAGUCUGCAUCGCCAAUAGAUUUUUUUAAA
..................(((((....((((..((..((.....(((((((.........))))))).))..)).))))((((((((........)))).))))..)))))......... ( -36.20)
>DroSim_CAF1 75492 120 - 1
AUGUCCAAGGUUCCAUAUAUCUGAUCCGCCAGCUCUGGAAAGUGACGCCUAAAAGCCCAAUAGGCGUAUCUGGAAUGGCGGCGUGCAUCGCAGUCUGCAUCGCCAAUAGAUUUUUUUAAA
..................(((((....((((..((..((.....(((((((.........))))))).))..)).))))((((((((........)))).))))..)))))......... ( -36.20)
>DroEre_CAF1 86576 120 - 1
AUGUCUAAGCUUCCAUAUAUUUGAUCUGCCAACUCUGGAAAGUGACGCCUAAAAGCCCAAUAGGCGCAUCUGGAAUGGCGGCGUGCAUCGCAGUCUGCAUCGCCAAUGGAUUUUUUCAAG
.((...(((..(((((...........((((..((..((...((.((((((.........))))))))))..)).))))((((((((........)))).)))).)))))..))).)).. ( -37.10)
>consensus
AUGUCCAAGGUUCCAUAUAUCUGAUCCGCCAGCUCUGGAAAGUGACGCCUAAAAGCCCAAUAGGCGUAUCUGGAAUGGCGGCGUGCAUCGCAGUCUGCAUCGCCAAUAGAUUUUUUUAAA
...........(((((...........((((..((..((.....(((((((.........))))))).))..)).))))((((((((........)))).)))).))))).......... (-34.09 = -34.65 +   0.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:03:01 2006