Locus 799

Sequence ID 3L_DroMel_CAF1
Location 2,400,336 – 2,400,431
Length 95
Max. P 0.828119
window1231

overview

Window 1

Location 2,400,336 – 2,400,431
Length 95
Sequences 5
Columns 110
Reading direction reverse
Mean pairwise identity 82.76
Mean single sequence MFE -19.19
Consensus MFE -13.06
Energy contribution -13.02
Covariance contribution -0.04
Combinations/Pair 1.28
Mean z-score -2.06
Structure conservation index 0.68
SVM decision value 0.70
SVM RNA-class probability 0.828119
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 2400336 95 - 23771897
GA--------UUUCAAAACAUCGGCGAAUUGAAGAAAUCGAACCCAGUUAAUUGGGUUAAGAAAAGUACACAAGUGACACAU-------AGAAAUCAUGAUCUAGAAAAU
((--------((((......((..(((.((....)).)))(((((((....)))))))..))...((.((....))))....-------.)))))).............. ( -15.80)
>DroSec_CAF1 27995 91 - 1
GA--------UUACAAAACACCGGCGAUUUGAAAAAAUUGAACCCAGUUAACUGGGUUAAGACAAGU----AAGUGACACAU-------AGAAACCGUGAUCUCGAAAAU
((--------((((....(((..(((((((....))))).(((((((....))))))).......))----..)))......-------.(....)))))))........ ( -22.00)
>DroSim_CAF1 27351 99 - 1
CACUUUUUUUUUUCAAAACACUGGCUAUUUGAAGAAAUUGAACCCAGUUAACUGGGUUAAGAAAAGC----AAGUGACACAU-------AGAAACCAUGAUCUCGAAAAU
.........(((((....((((.(((.(((.((....)).(((((((....)))))))..))).)))----.))))...(((-------.......))).....))))). ( -20.60)
>DroEre_CAF1 27118 91 - 1
GA--------UUACAAAACAUCGGCGAUUUGAAGAAAUCGAACCCAGUUAACUGGGUUAGGAAAAGC----AAGUGACACAU-------GGCAACCAUGAUCUCAAAAAU
((--------(.......(((..(((((((....))))).(((((((....))))))).......))----..)))...(((-------((...))))))))........ ( -23.00)
>DroYak_CAF1 27861 98 - 1
GA--------UUACAAAACAUCGGCGAUUUGAAGAAAUCGAACACAGUUAACUGGGUUAAGAAAAGU----AAGUGGCACAUAGAACAUAGAAACUAUGAUCUCAAAAAU
..--------.............((.(((((.........(((.(((....))).)))........)----)))).))....(((.(((((...))))).)))....... ( -14.53)
>consensus
GA________UUACAAAACAUCGGCGAUUUGAAGAAAUCGAACCCAGUUAACUGGGUUAAGAAAAGU____AAGUGACACAU_______AGAAACCAUGAUCUCGAAAAU
..................(((.((((((((....))))))(((((((....)))))))....................................)))))........... (-13.06 = -13.02 +  -0.04)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:51:30 2006