Locus 7989

Sequence ID 3L_DroMel_CAF1
Location 21,113,279 – 21,113,399
Length 120
Max. P 0.845062
window13039

overview

Window 9

Location 21,113,279 – 21,113,399
Length 120
Sequences 4
Columns 120
Reading direction forward
Mean pairwise identity 98.06
Mean single sequence MFE -35.75
Consensus MFE -35.17
Energy contribution -34.98
Covariance contribution -0.19
Combinations/Pair 1.03
Mean z-score -1.97
Structure conservation index 0.98
SVM decision value 0.77
SVM RNA-class probability 0.845062
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 21113279 120 + 23771897
AGUAUACACAUGCACCAAAGCUGCUCAAGAUCUACACAGACACUCUGAAUCAAUCAAAGUCGAAGGACAUAAGGUCCACACUGUGUGAGCUGAUGGUGCUGCUCUUCGAGGAGUGGCAGA
.((((....))))((((.((((..........(((((((..(((.(((.....))).)))....((((.....))))...)))))))))))..))))((..((((....))))..))... ( -35.60)
>DroSec_CAF1 163885 120 + 1
AGUAUACACAUGCACCAAAGCUGCUCAAGAUCUACACAGACACUCUGAAUCAAUCAAAGUCGAAGGACAUAAGGUCCACACUGUGUGAGCUUAUGGUGCUGCUCUUUGAGGAGUGGCAGA
.((((....))))(((((((((..........(((((((..(((.(((.....))).)))....((((.....))))...)))))))))))).))))((..((((....))))..))... ( -36.10)
>DroSim_CAF1 75332 120 + 1
AGUAUACACAUGCACCAAAGCUGCUCAAGAUCUACACAGACACUCUGAAUCAAUCAAAGUCGAAGGACAUAAGGUCCACACUGUGUGAGCUUAUGGUGCUGCUCUUUGAGGAGUGGCAGA
.((((....))))(((((((((..........(((((((..(((.(((.....))).)))....((((.....))))...)))))))))))).))))((..((((....))))..))... ( -36.10)
>DroEre_CAF1 86416 120 + 1
AGUAUACACAUGCGCCAAAGUUGCUCAAGAUCUACACAGACACUCUGAAUCAAUCAAAGUCGAAGGACAUAAGGUCCACACUGUGUGAGCUGAUGGUGCUGCUCUUCGAGGAGUGGCAGA
.((((....))))((((.....((((.......((((((..(((.(((.....))).)))....((((.....))))...))))))))))...))))((..((((....))))..))... ( -35.21)
>consensus
AGUAUACACAUGCACCAAAGCUGCUCAAGAUCUACACAGACACUCUGAAUCAAUCAAAGUCGAAGGACAUAAGGUCCACACUGUGUGAGCUGAUGGUGCUGCUCUUCGAGGAGUGGCAGA
.((((....))))((((.....((((.......((((((..(((.(((.....))).)))....((((.....))))...))))))))))...))))((..((((....))))..))... (-35.17 = -34.98 +  -0.19)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:03:00 2006