Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 21,112,639 – 21,112,759 |
Length | 120 |
Max. P | 0.709566 |
Location | 21,112,639 – 21,112,759 |
---|---|
Length | 120 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 94.72 |
Mean single sequence MFE | -39.17 |
Consensus MFE | -34.72 |
Energy contribution | -36.10 |
Covariance contribution | 1.38 |
Combinations/Pair | 1.03 |
Mean z-score | -1.66 |
Structure conservation index | 0.89 |
SVM decision value | 0.37 |
SVM RNA-class probability | 0.709566 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 21112639 120 + 23771897 CAAAAGUUCGACCAGGUCAAACAGGAGGGUCUACUGCUACCUUCAGCCCUUAAAAACACGAAUGGCAAUGGAGUGGGCUUGGACGAGGCCGACAAUAUUGGGUUGAGGGAGCGACCCACC .....(((.(((...))).))).((.(((((....(((.((((((((((.......((....))..((((..((.(((((.....))))).))..)))))))))))))))))))))).)) ( -43.20) >DroSec_CAF1 163245 120 + 1 ACAAAGUUCGACCAGGUCAAACAGGAGGGUCUACUGCUACCUUCAGCCCUUAAAAACACGAAUGGCAAUGGAGUGGGCAUGGACGAAGCCGACAAUAUUGGGUUGAGGGAGCGGCCCACC .....(((.(((...))).))).((.(((((....(((.((((((((((.......((....))..((((..((.(((.........))).))..)))))))))))))))))))))).)) ( -39.90) >DroSim_CAF1 74692 120 + 1 ACAAAGUUCGACCAGGUCAAACAGGAGGGUCUACUGCUACCUUCAGCCCUUAAAAACACGAAUGGCAAUGGAGUGGGCAUGGACGAAGCCGACAAUAUUGGGUUGAGGGAGCGGCCCACC .....(((.(((...))).))).((.(((((....(((.((((((((((.......((....))..((((..((.(((.........))).))..)))))))))))))))))))))).)) ( -39.90) >DroEre_CAF1 85776 120 + 1 CAAAAGUUCGACCAGGUCAAACAGGAGGGCCUACUACUACCUUCAGCCCUUAAAAACACCAAUGGCAAUGGAGUUGGCUUGGACGAGGCCGACAAUAUUGGUUUGAGAGAGCGACCCACC ..............((((.....(((((...........))))).((.(((..((((.((...))(((((..((((((((.....))))))))..)))))))))..))).)))))).... ( -33.70) >consensus AAAAAGUUCGACCAGGUCAAACAGGAGGGUCUACUGCUACCUUCAGCCCUUAAAAACACGAAUGGCAAUGGAGUGGGCAUGGACGAAGCCGACAAUAUUGGGUUGAGGGAGCGACCCACC .....(((.(((...))).))).((.(((((....(((.((((((((((.......((....))..((((..((.(((((.....))))).))..)))))))))))))))))))))).)) (-34.72 = -36.10 + 1.38)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:02:59 2006