Locus 7987

Sequence ID 3L_DroMel_CAF1
Location 21,111,563 – 21,111,662
Length 99
Max. P 0.691066
window13037

overview

Window 7

Location 21,111,563 – 21,111,662
Length 99
Sequences 4
Columns 116
Reading direction forward
Mean pairwise identity 73.18
Mean single sequence MFE -22.27
Consensus MFE -10.59
Energy contribution -12.03
Covariance contribution 1.44
Combinations/Pair 1.14
Mean z-score -2.09
Structure conservation index 0.48
SVM decision value 0.33
SVM RNA-class probability 0.691066
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 21111563 99 + 23771897
AAAGGUGGAGCAUUCAAUUCGUCAUUGCUGUGCAGUUCCUUGCCUUGCUAUGGAAUUUAUAGUAAAAACAUUGAAUCAGAGUAAACUCUAUCUAAAAAA-----------------
..((((((((.((((.(((((...((((((((.((((((..((...))...))))))))))))))......)))))..))))...))))))))......----------------- ( -25.20)
>DroSec_CAF1 162162 99 + 1
AAAGAUGGAGCAUUCAAUUCGUCAUUGCUUUGCAGUUCCUUGCCUUGCUAUGGAAUUUAUAGUAAAAACAUUGAAUCAGAGUAAACUCUUUCUAAAAAC-----------------
...((((((........)))))).((((((((..((((..((..((((((((.....))))))))...))..))))))))))))...............----------------- ( -20.30)
>DroSim_CAF1 73610 99 + 1
AAAGAUGGAGCAUUCAAUUCGUCAUUGCUUUGCAGUUCCUUGCCUUGCUAUGGAAUUUAUAGUAAAAACAUUGAAUCGAAGUAAACUCUUUCUAGAAAC-----------------
...((((((........)))))).((((((((..((((..((..((((((((.....))))))))...))..))))))))))))..(((....)))...----------------- ( -20.00)
>DroYak_CAF1 56630 104 + 1
AAAGAUGGAGCAUUCAAUUGGAUGUUGAAUUGCAGUUCCUUGCUUUGUAG------------UAGGAGCAGUCGAUAAGAGUUAACGCAAUAUAAAAAAAGUUCACAAAAAAAAAA
.....((((((..(((((.....)))))(((((.((((((.(((....))------------))))))).((..((....))..))))))).........)))).))......... ( -23.60)
>consensus
AAAGAUGGAGCAUUCAAUUCGUCAUUGCUUUGCAGUUCCUUGCCUUGCUAUGGAAUUUAUAGUAAAAACAUUGAAUCAGAGUAAACUCUAUCUAAAAAA_________________
..((((((((.((((.(((((..........((((....)))).((((((((.....))))))))......)))))..))))...))))))))....................... (-10.59 = -12.03 +   1.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:02:58 2006