Locus 7986

Sequence ID 3L_DroMel_CAF1
Location 21,110,193 – 21,110,310
Length 117
Max. P 0.517749
window13036

overview

Window 6

Location 21,110,193 – 21,110,310
Length 117
Sequences 4
Columns 120
Reading direction forward
Mean pairwise identity 94.31
Mean single sequence MFE -29.00
Consensus MFE -21.69
Energy contribution -23.50
Covariance contribution 1.81
Combinations/Pair 1.03
Mean z-score -2.33
Structure conservation index 0.75
SVM decision value -0.03
SVM RNA-class probability 0.517749
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 21110193 117 + 23771897
UUUUUCCAACCGACGACUGGAAAAUCAAUUCUUCGGAUUGCCAAAGGGGAACAACAACUAGCAGUUGUUGAAGUUUUCCUU---UAUAUUUUUUGCGGCCCAGCCCAAAACAAAAAGCAA
.(((((((.........))))))).....((....))((((.(((((..(((..((((........))))..)))..))))---).....(((((.(((...))))))))......)))) ( -30.30)
>DroSec_CAF1 160782 120 + 1
UUUUUCCAACCGACGACUGGAAAAUCAAUUCUUCGGAUUGCCAAAGGGGAACAACAACUAGCAGUUGUUGAAGUUUUCCUUUCUUAUAUUUUUUGAGGCCCAGCCCAAAACAAAAAGCAA
.(((((((.........))))))).....((....))((((.(((((..(((..((((........))))..)))..)))))........(((((.(((...))))))))......)))) ( -29.70)
>DroSim_CAF1 68420 120 + 1
UUUUUCCAACCGACGACUGGAAAAUCAAUUCUUCGGAUUGCCAAAGGGGAACAACAACUAGCAGUUGUUGAAGUUUUCCUUUCUUAUAUUUUUUGCGGCCCAGCCCAAAACAAAAAGCAA
.(((((((.........))))))).....((....))((((.(((((..(((..((((........))))..)))..)))))........(((((.(((...))))))))......)))) ( -29.70)
>DroEre_CAF1 83368 115 + 1
UUUUUCCAACCGACGACUGGAAAAUCAAUUCUUCGGAUUGCCAAAGGGCAAAAACAACUAGCAGUUGUUGAAGUU-----UUCUUAUAUUUUUUGUGGCCCAGCCCAAAACAAAAAACAG
..........(((((((((..........((....))(((((....)))))..........))))))))).....-----........(((((((((((...)))....))))))))... ( -26.30)
>consensus
UUUUUCCAACCGACGACUGGAAAAUCAAUUCUUCGGAUUGCCAAAGGGGAACAACAACUAGCAGUUGUUGAAGUUUUCCUUUCUUAUAUUUUUUGCGGCCCAGCCCAAAACAAAAAGCAA
.........((((.((...(.....)...)).)))).((((.((((((((((((((((.....))))))...))))))))))........(((((.(((...))))))))......)))) (-21.69 = -23.50 +   1.81)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:02:57 2006