| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 21,109,600 – 21,109,719 |
| Length | 119 |
| Max. P | 0.940907 |
| Location | 21,109,600 – 21,109,719 |
|---|---|
| Length | 119 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 93.29 |
| Mean single sequence MFE | -38.60 |
| Consensus MFE | -32.95 |
| Energy contribution | -33.99 |
| Covariance contribution | 1.04 |
| Combinations/Pair | 1.09 |
| Mean z-score | -1.70 |
| Structure conservation index | 0.85 |
| SVM decision value | 1.31 |
| SVM RNA-class probability | 0.940907 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 21109600 119 - 23771897 UUUGCCACGGCCUGCGG-UUUAUUACACGGUUUUUAGCUUAAUUUCAGCAGCGAUUCGCCAGCCCGUUGCGUUGCAAAAAAAAAUUUACAAACAGUGUGACCGCACGUGGGCGGUGCGCA ..((((((.(((..(((-(...((((((.((((.(((.((..(((..((((((...((......))...))))))..)))..)).))).)))).))))))..)).))..))).))).))) ( -39.90) >DroSec_CAF1 160183 119 - 1 UUUGCCACGGCUUGCGG-UUUAAUACACGGUUUUUAGCUUAAUUUCAGCAGCGUUUCGCCAGCCCGUUGCGUUGCAAAAAAAAAUUUACAAACAGUGUGACCGCACGCGGGCGGUGCGCA ..((((((.((((((((-(....(((((.((((.(((.((..(((..(((((((..((......))..)))))))..)))..)).))).)))).)))))...)).))))))).))).))) ( -40.30) >DroSim_CAF1 67821 119 - 1 UUUGCCACGGCUUGCGG-UUUAAUACACGGUUUUUAGCUUAAUUUCAGCAGCGUUUCGCCAGCCCGUUGCGUUGCAAAAAAAAAUUUACAAACAGUGUGACCGCACGCGGGCGGUGCGCA ..((((((.((((((((-(....(((((.((((.(((.((..(((..(((((((..((......))..)))))))..)))..)).))).)))).)))))...)).))))))).))).))) ( -40.30) >DroEre_CAF1 82773 117 - 1 UUUGCCACGGCUUGCGG--AUAUUACACGGUUUCUAUAUUAAUUUCAGCAGCGUUUCGCCAGCCCGUUGCGUUGCAAAA-AAAAUUUACAAACAGUGUGACCGCACGUGGACAGCGCGCA .((((((((...(((((--...((((((.((((.((.(((..(((..(((((((..((......))..)))))))..))-).))).)).)))).)))))))))))))))).)))...... ( -36.00) >DroYak_CAF1 54648 119 - 1 UCUGCCACGGGUUGCGGGUAUAUUACACGGUUUUUAGCUUAAUUUCAGCAGCGUUUUGCCAGCCCGUUGCGUUGCAAAA-AAAAUUUACAAAAAGUGUGACCGCACGCGGGCGGUGCGCA .(((((.((.((.((((.....(((((((((.....)))........(((((((..((......))..)))))))....-..............)))))))))))).)))))))...... ( -36.50) >consensus UUUGCCACGGCUUGCGG_UUUAUUACACGGUUUUUAGCUUAAUUUCAGCAGCGUUUCGCCAGCCCGUUGCGUUGCAAAAAAAAAUUUACAAACAGUGUGACCGCACGCGGGCGGUGCGCA ..((((((.(((((((......((((((.((((.(((..........(((((((..((......))..)))))))..........))).)))).)))))).....))))))).))).))) (-32.95 = -33.99 + 1.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:02:54 2006