Locus 7983

Sequence ID 3L_DroMel_CAF1
Location 21,108,596 – 21,108,716
Length 120
Max. P 0.979239
window13032

overview

Window 2

Location 21,108,596 – 21,108,716
Length 120
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 93.33
Mean single sequence MFE -51.14
Consensus MFE -48.52
Energy contribution -48.56
Covariance contribution 0.04
Combinations/Pair 1.09
Mean z-score -1.52
Structure conservation index 0.95
SVM decision value 1.83
SVM RNA-class probability 0.979239
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 21108596 120 - 23771897
CAGUUUUUGUUGACCUGGUGGACGGCCUGUGCCCGUCCGGAUGGAUCCUCCGGACAGCCCCAAUCGAGGCGUGGCACCCAUCUGACCACGGUUCGGGCCGCCGAUUCUCCGGGGAAUUGU
((((((.......(((((.(((((((..(.(((((((((((.(....))))))))..........(((.(((((((......)).))))).)))))))))))).))).))))))))))). ( -52.71)
>DroSec_CAF1 159228 120 - 1
CAGUCUUUGUUGACCUGGUGGACGGCCUGCGCCCGUCCGGAUGGAUCCUCCGGACAGCCCCAAUCGAGGCGUGGCACCCAUCUGACCACGGUUCGGGCUGCCGAUUCUCCGGGGAAUUGU
.............(((((.(((((((....(((((((((((.(....))))))))..........(((.(((((((......)).))))).))))))).)))).))).)))))....... ( -52.70)
>DroSim_CAF1 66868 120 - 1
CAGUCUUUGUUGACCUGGUGGACGGCCUGCGCCCUUCCGGAUGGAUCCUCCGGACAGCCCCAAUCGAGGCGUGGCACCCAUCUGACCACGGUUCGGGCUGCCGAUUCUCCGGGGAAUUGU
.............(((((.(((((((....((((.((((((.(....)))))))...........(((.(((((((......)).))))).))))))).)))).))).)))))....... ( -48.20)
>DroEre_CAF1 81980 120 - 1
CAGUCUUCGUUGAAUUGGUGGACGGCCUGUGCCCGUCCGGAUGGAUCCUCCGGACAGCCCCAAUCGAGGCGUGGCACCCAUCUGACUACGGUUCGGGCUGCCGAUUCUCCGGGGAAUUGU
(((((((((..(((((((..(..((...(((((((((((((.(....)))))))).(((.(....).)))).))))))).((((((....).))))))..)))))))..))))).)))). ( -53.80)
>DroYak_CAF1 53792 111 - 1
---------UUGAACUGGUGAACGGCCUGUGCCCGUCCGGAUGGAUCCUCCGGACAUCCCCAAUCGAGGCGUGGCACCCAUCUGACUACGGUUCGGGCUGCCGAUUCUCCGGGGAAUUGU
---------.....((((.(((((((....(((((((((((.(....))))))))..........(((.(((((((......)).))))).))))))).)))).))).))))........ ( -48.30)
>consensus
CAGUCUUUGUUGACCUGGUGGACGGCCUGUGCCCGUCCGGAUGGAUCCUCCGGACAGCCCCAAUCGAGGCGUGGCACCCAUCUGACCACGGUUCGGGCUGCCGAUUCUCCGGGGAAUUGU
.............(((((.(((((((....(((((((((((.(....))))))))..........(((.(((((((......)).))))).))))))).)))).))).)))))....... (-48.52 = -48.56 +   0.04)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:02:53 2006