Locus 7982

Sequence ID 3L_DroMel_CAF1
Location 21,108,196 – 21,108,316
Length 120
Max. P 0.805955
window13031

overview

Window 1

Location 21,108,196 – 21,108,316
Length 120
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 96.50
Mean single sequence MFE -37.36
Consensus MFE -34.74
Energy contribution -34.30
Covariance contribution -0.44
Combinations/Pair 1.10
Mean z-score -1.29
Structure conservation index 0.93
SVM decision value 0.63
SVM RNA-class probability 0.805955
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 21108196 120 - 23771897
UAUCCUCCGGUCGGAUUUGCAUCACAUGGUUAACGAACCCCGUGUCCAGAAAGGGCACUCGCAGCUCCACGCCCUUGGCCAUGGCCACCUUGUUGGCCCGCAAACAAUCGGAUAAAUGCA
((((((((....)))(((((....(((((((((.(......((((((.....))))))..((........))).)))))))))((((......))))..))))).....)))))...... ( -37.40)
>DroSec_CAF1 158828 120 - 1
UAUCCUCCGGCCGGAUUUGCAUUACAUGGUUAACGAAUCCCGUGUCCAGAAAGGGCACUCGCAGCUCCACGCCCUUGGCCAUGGCCACCUUGUUGGCCCGCAAACAAUCGGAUAAAUGCA
((((((((....)))(((((....(((((((((.(......((((((.....))))))..((........))).)))))))))((((......))))..))))).....)))))...... ( -37.40)
>DroSim_CAF1 66468 120 - 1
UAUCCUCCGGCCGGAUUUGCAUCACAUGGUUAACGAAUCCCGUGUCCAGAAAGGGCACUCGCAGCUCCACGCCCUUGGCCAUGGCCACCUUGUUGGCCCGCAAACAAUCGGAUAAAUGCA
(((((...(((((((((((.(((....)))...))))))).((((((.....))))))..................))))..(((((......)))))...........)))))...... ( -38.30)
>DroEre_CAF1 81580 120 - 1
UAUCCUCCGGUCGGAUUUGCAUCACAUGGUUAACAAAGCCCGUGUCCAGAAAGGGCACUCGCAGCUCCACUCCCUUGGCCAUGGCUACCUUGUUGGCCCGCAAGCAAUCGGAUAAAUGCA
(((((...(((((((.((((.......((((.....)))).((((((.....))))))..)))).))).......((((....)))).......))))(....).....)))))...... ( -35.70)
>DroYak_CAF1 53392 120 - 1
UAUCCUCCGGUCGGAUUUGCAUCACAUGGUUAACGAACCCCGUGUCCAGAAAGGGCACUCGCAGCUCCACUCCCUUGGCCAUGGCUACCUUGUUGGCCCGCAGACAAUCGGAUAAAUGCA
(((((....((((((.((((.......((((....))))..((((((.....))))))..)))).)))........(((((..((......)))))))....)))....)))))...... ( -38.00)
>consensus
UAUCCUCCGGUCGGAUUUGCAUCACAUGGUUAACGAACCCCGUGUCCAGAAAGGGCACUCGCAGCUCCACGCCCUUGGCCAUGGCCACCUUGUUGGCCCGCAAACAAUCGGAUAAAUGCA
(((((...(((((((.((((.......((((....))))..((((((.....))))))..)))).)))........))))..(((((......)))))...........)))))...... (-34.74 = -34.30 +  -0.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:02:52 2006