Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 21,107,197 – 21,107,316 |
Length | 119 |
Max. P | 0.621296 |
Location | 21,107,197 – 21,107,316 |
---|---|
Length | 119 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 92.80 |
Mean single sequence MFE | -44.44 |
Consensus MFE | -35.06 |
Energy contribution | -34.26 |
Covariance contribution | -0.80 |
Combinations/Pair | 1.18 |
Mean z-score | -1.54 |
Structure conservation index | 0.79 |
SVM decision value | 0.18 |
SVM RNA-class probability | 0.621296 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 21107197 119 + 23771897 UGGAAGGGGUGGCCAUGAUUCAUGAACGCCUGCGAAUCAUUGGCGUGGAAAUGGGCGACCAACCCUUCGUCUCUGAAGAUGGUAACCUCAUCCUG-GUGGCCAAUGGAGAGAUCUACAAU ..((((((...((((((((((............)))))).)))).......(((....))).))))))((((((..(..((((.(((.......)-)).)))).)..))))))....... ( -41.20) >DroSec_CAF1 157828 120 + 1 CGGAAGGAGUGGCCAUGGUUCAUGAACGCCUGCGAAUCGUUGGCGUGGAAAUGGGCGACCAGCCCUUCGUCUCUGAGGAUGGUAACCUCAUCCUGGGUGGCCAACAGAGAGAUCUACAAC ..(((((..(((...(.((((((..(((((.(((...))).)))))....)))))).))))..))))).(((((((((((((.....)))))))((....))..)))))).......... ( -44.10) >DroSim_CAF1 65469 119 + 1 CUGAAGGAGUGGCCAUGGUUCAUGAACGCCUGCGAAUCGUUGGCGUGGAAAUGGGCGACCAGCCUUUCGUCUCUGAGGAUGGUAACCUCAUCCUG-GUGGCCAACGGAGAGAUCUACAAC ..(((((.((.(((....(((....(((((.(((...))).))))).)))...))).))...))))).((((((..(..((((.(((.......)-)).)))).)..))))))....... ( -41.30) >DroEre_CAF1 80581 119 + 1 CGGACGGAGUGGCCAUGGUUCAUGAACGCCUGCGAAUUGUGGGCGUGGAAAUGGGCGAUCAGCCCUUCGUCUCUGAUGAUGGCAACCUCAUCCUG-GUGGCCAACGGAGAGAUCUACAAC .((((((((.(((.((.((((((..(((((..(.....)..)))))....)))))).))..))))))))(((((..((.((((.(((.......)-)).)))).)).))))))))..... ( -47.70) >DroYak_CAF1 52393 119 + 1 CGGAAGGAGUGGCCAUGGUUCAUGAACGCCUGCGAAUUGUGGGCGUGGAAAUGGGCGAUCAGCCAUUCGUCUCUGAGGAUGGCAACCUCAUCCUG-GUGGCCAACGGAGAAAUCUACAAC .(((..(((((((.((.((((((..(((((..(.....)..)))))....)))))).))..))))))).((((((....((((.(((.......)-)).)))).))))))..)))..... ( -47.90) >consensus CGGAAGGAGUGGCCAUGGUUCAUGAACGCCUGCGAAUCGUUGGCGUGGAAAUGGGCGACCAGCCCUUCGUCUCUGAGGAUGGUAACCUCAUCCUG_GUGGCCAACGGAGAGAUCUACAAC ((((.((.((.(((....(((....(((((..((...))..))))).)))...))).))...)).))))((((((....((((.(((.......).)).)))).)))))).......... (-35.06 = -34.26 + -0.80)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:02:47 2006