Locus 7977

Sequence ID 3L_DroMel_CAF1
Location 21,105,688 – 21,105,808
Length 120
Max. P 0.553250
window13025

overview

Window 5

Location 21,105,688 – 21,105,808
Length 120
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 97.33
Mean single sequence MFE -43.54
Consensus MFE -40.60
Energy contribution -40.40
Covariance contribution -0.20
Combinations/Pair 1.10
Mean z-score -1.16
Structure conservation index 0.93
SVM decision value 0.04
SVM RNA-class probability 0.553250
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 21105688 120 - 23771897
CUUCCAAGUCGUUUUGUCGGCAACGAACGGCCUUUCAAUUCAGUUGCCGAUGGAACGCGACACUGUGCGGCAGGAAGUUGCGUAUACGACGCAUUGUCACUCGGCUAGCGACGUGGAUCG
..((((.(((((((..(((((((((((..(.....)..))).))))))))..))))((....(((.(.(((((...((((......))))...))))).).)))...))))).))))... ( -45.40)
>DroSec_CAF1 156105 120 - 1
CUUCCAAGUCGUUUUGUCGGCAACGAACGGCCUUUCAAUUCAGUUGCCGAUGGAACGCGACACUGUGCGGCAGGAAGUUGCGUAUACGACGCAUUGUCACUCGGCUAGCGACGCGGAUCG
..(((.....((((..(((((((((((..(.....)..))).))))))))..))))(((.(.(((.((.(.((((...(((((.....)))))...)).))).))))).).))))))... ( -44.70)
>DroSim_CAF1 63717 120 - 1
CUUCCAAGUCGUUUUGUCGGCAACGAACGGCCUUUCAAUUCAGUUGCCGAUGGAACGCGACACUGUGCGGCAGGAAGUUGCGUAUACGACGCAUUGUCACUCGGCUAGCGACGCGGAUCG
..(((.....((((..(((((((((((..(.....)..))).))))))))..))))(((.(.(((.((.(.((((...(((((.....)))))...)).))).))))).).))))))... ( -44.70)
>DroEre_CAF1 78565 120 - 1
CUUCCAAGUCGUUUUGUCGGCACCGAACGGCCUUUCAAUUCAGUUGCCGAUGGAACGCGACACUGUGCGGCAGGAAGUUGCGUAUACGACGCAUUGUCACUCGGCCAGCGACGUGGAUCG
..((((.(((((((..(((((((.(((..(.....)..))).).))))))..))))......(((.((.(.((((...(((((.....)))))...)).))).))))).))).))))... ( -42.40)
>DroYak_CAF1 50567 120 - 1
CUUCCAAGUCAUUUCGUCGGCAACGAACGGCCUUUCAAUUCAGUUGCCGAUGGAACGCGACACUGUGCGGCAGGAAGUUGCGUAUACGACGCAUUGUCAUUCGGCCAGCGACGUGAAUCG
...........((((((((((((((((..(.....)..))).)))))))))))))((((.(.(((.((.(...((...(((((.....)))))...))...).))))).).))))..... ( -40.50)
>consensus
CUUCCAAGUCGUUUUGUCGGCAACGAACGGCCUUUCAAUUCAGUUGCCGAUGGAACGCGACACUGUGCGGCAGGAAGUUGCGUAUACGACGCAUUGUCACUCGGCUAGCGACGUGGAUCG
..(((.....(((((((((((((((((..(.....)..))).))))))))))))))(((.(.(((.((.(.((((...(((((.....)))))...)).))).))))).).))))))... (-40.60 = -40.40 +  -0.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:02:45 2006