| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 21,105,096 – 21,105,215 |
| Length | 119 |
| Max. P | 0.578634 |
| Location | 21,105,096 – 21,105,215 |
|---|---|
| Length | 119 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 96.00 |
| Mean single sequence MFE | -40.98 |
| Consensus MFE | -34.98 |
| Energy contribution | -35.78 |
| Covariance contribution | 0.80 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.34 |
| Structure conservation index | 0.85 |
| SVM decision value | 0.09 |
| SVM RNA-class probability | 0.578634 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 21105096 119 - 23771897 GAGCCCGAAAAUCGAAGGGAAUCGAGCGUGACCUAUUACUGUCACGUCCGUUUCCGGAAUUCCGAGUGAGGUGGCCAAAACACGGGCC-CCAACUUUUGGGUCACGUUCGCUGGCUGAAC .((((.(....((....))...((((((((((((((((((......((((....))))......)))))((.((((........))))-))......)))))))))))))).)))).... ( -46.30) >DroSec_CAF1 155333 120 - 1 GAGCCCGAAAAUCGAAGGGAAUGGAGCAUGACCUAUUACUGUCACGUCCGUUUCCGGAAUUCCGAGUGAGGUGGCCAAAACACGGGCCCCCAAAUUUUGGGUCACGUUCGCUGGCUGAAC .((((((((..((...(((((((((.(.((((........)))).))))))))))((....))))((((...((((........))))((((.....)))))))).))))..)))).... ( -42.40) >DroSim_CAF1 62893 119 - 1 GAGCCCGAAAAUCGAAGGGAAUGGAGCAUGACCUAUUACUGUCACGUCCGUUUCCGGAAUUCCGAGUGAGGUGGCCAAAACACGGGCC-CCAACUUUUGGGUCACGUUCGCUGGCUGAAC ((.(((((((.((...(((((((((.(.((((........)))).))))))))))((....))))....((.((((........))))-))...)))))))))..(((((.....))))) ( -40.50) >DroEre_CAF1 77739 120 - 1 GAGACCGAAAAUCGAAGGGAAUCGAGCAUGACCUAUUACUGUCACGUCCGUUUCCGGAAUUCUGAGUGAGAUGGCCAAAACAAGGGCCACCAACUUUUUGGUCACGUUCGCUGGCUGAAC ..(((((((((......((((.((..(.((((........)))).)..)).))))((..(((.....))).(((((........)))))))...)))))))))..(((((.....))))) ( -35.60) >DroYak_CAF1 49756 120 - 1 GAGCCCGAAAAUCGAAGGGUAUCGAGCAUGACCUAUUACUGUCACGUCCGUUUCCGGAAUUCCGAGUGAGAUGGCCAAAACACGGGCCACCAACUUUUGGGUCACGUUCGCUGGCUGAAC .((((.(...(((....)))..(((((.((((((((((((......((((....))))......)))))(.(((((........))))).)......))))))).)))))).)))).... ( -40.10) >consensus GAGCCCGAAAAUCGAAGGGAAUCGAGCAUGACCUAUUACUGUCACGUCCGUUUCCGGAAUUCCGAGUGAGGUGGCCAAAACACGGGCC_CCAACUUUUGGGUCACGUUCGCUGGCUGAAC .((((.(....((....))....((((.((((((((((((......((((....))))......)))))((.((((........)))).))......))))))).)))).).)))).... (-34.98 = -35.78 + 0.80)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:02:44 2006