Locus 7975

Sequence ID	3L_DroMel_CAF1
Location	21,104,465 – 21,104,625
Length	160
Max. P	0.926721

overview

Window 2

Location	21,104,465 – 21,104,585
Length	120
Sequences	5
Columns	120
Reading direction	reverse
Mean pairwise identity	96.50
Mean single sequence MFE	-35.66
Consensus MFE	-32.28
Energy contribution	-32.52
Covariance contribution	0.24
Combinations/Pair	1.08
Mean z-score	-1.53
Structure conservation index	0.91
SVM decision value	1.18
SVM RNA-class probability	0.926721
Prediction	RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 21104465 120 - 23771897
CGGAUGCGACGGAAAUGGAUAACCAUGUUGUUUGCAGUCGGCGGAAAUCAAUUCGCAUUACUGCAGCCUCAGUGAGCUGCCCAAAAAACUUUGUGCGCAGCGGGCAAAACGCAAAUAAAU
....(((((((...((((....))))..))).((((((..(((((......)))))...))))))((((......((((((((((....)))).).)))))))))....))))....... ( -36.70)
>DroSec_CAF1 154672 120 - 1
CGGAUGCGACGGAAAUGGAUAACCGUGUUGUUUGCAGUCGGCGGAAAUCAAUUCGCAUUACUGCAGGCUCAGUGAGCUGCCCAAAAAACUUUGUGCGCAGCAGGCAAAACGCAAAUAAAU
....((((((((..........))))...(((((((((..(((((......)))))...)))))))))...((..((((((((((....)))).).)))))..))....))))....... ( -38.30)
>DroSim_CAF1 62232 120 - 1
CGGAUGCGACGGAAAUGGAUAACCGUGUUGUUUGCAGUCGGCGGAAAUCAAUUCGCAUUACUGCAGCCUCAGUGAGCUGCCCAAAAAACUUUGUGCGCAGCGGGCAAAACGCAAAUAAAU
....((((((((..........))))......((((((..(((((......)))))...))))))((((......((((((((((....)))).).)))))))))....))))....... ( -36.80)
>DroEre_CAF1 77044 119 - 1
CGGAUGCGACAGAAAUGGAUAACCGUAUUGUUUGCAGUCGGCGGAAAUCAAUUCGCAUUACUGCAGCCUCAACGAGCUGCCCAA-AAACUUUGUGCGCAGCGGGCAAAACGCAAAUAAAU
....((((((((..((((....)))).)))).((((((..(((((......)))))...))))))((((......(((((((((-.....))).).)))))))))....))))....... ( -35.20)
>DroYak_CAF1 49081 120 - 1
CGGAUGCGACAGAAAUGGAUAACCGUGUUGUUUGCAGUCGGCGGAAAUCAAUUCACAUUACUGCAGCCUCAGUGAGCUGCCCAAAAAACUUUGUGCGCAGCGGGGAAAACGCAAAUAAAU
((..((((((((..((((....)))).))).)))))..))(((....((........((((((......))))))((((((((((....)))).).)))))...))...)))........ ( -31.30)
>consensus
CGGAUGCGACGGAAAUGGAUAACCGUGUUGUUUGCAGUCGGCGGAAAUCAAUUCGCAUUACUGCAGCCUCAGUGAGCUGCCCAAAAAACUUUGUGCGCAGCGGGCAAAACGCAAAUAAAU
....((((((((..((((....)))).)))).((((((..(((((......)))))...))))))((((......((((((((((....)))).).)))))))))....))))....... (-32.28 = -32.52 +   0.24)

alignment

secondary structure

dotplot

Window 3

Location	21,104,505 – 21,104,625
Length	120
Sequences	5
Columns	120
Reading direction	reverse
Mean pairwise identity	96.50
Mean single sequence MFE	-38.32
Consensus MFE	-32.56
Energy contribution	-32.64
Covariance contribution	0.08
Combinations/Pair	1.10
Mean z-score	-1.38
Structure conservation index	0.85
SVM decision value	0.06
SVM RNA-class probability	0.564610
Prediction	RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 21104505 120 - 23771897
GUGGCUUGUUGUUGUGUGAUAUGCUGUAAGGAUACGGAUACGGAUGCGACGGAAAUGGAUAACCAUGUUGUUUGCAGUCGGCGGAAAUCAAUUCGCAUUACUGCAGCCUCAGUGAGCUGC
(..(((..(((((((((......(((((....)))))......)))))))((..((((....)))).....(((((((..(((((......)))))...)))))))))..))..)))..) ( -36.80)
>DroSec_CAF1 154712 120 - 1
GUGGCUUGUUGUUGUGUGAUAUGCUGUAAGGAUACGGAUACGGAUGCGACGGAAAUGGAUAACCGUGUUGUUUGCAGUCGGCGGAAAUCAAUUCGCAUUACUGCAGGCUCAGUGAGCUGC
(..(((..(((((((((......(((((....)))))......))))))).((.((((....))))...(((((((((..(((((......)))))...)))))))))))))..)))..) ( -38.80)
>DroSim_CAF1 62272 120 - 1
GUGGCUUGUUGUUGUGUGAUAUGCUGUAAGGAUGCGGAUACGGAUGCGACGGAAAUGGAUAACCGUGUUGUUUGCAGUCGGCGGAAAUCAAUUCGCAUUACUGCAGCCUCAGUGAGCUGC
(..(((..(((...........((((((..(((((((((.((..(((((((...((((....))))..)).)))))..))...(....).)))))))))..))))))..)))..)))..) ( -39.12)
>DroEre_CAF1 77083 120 - 1
GUGGCUUGUUGUUGUGUGAUAUGCUGUAAGGAUACGGAUACGGAUGCGACAGAAAUGGAUAACCGUAUUGUUUGCAGUCGGCGGAAAUCAAUUCGCAUUACUGCAGCCUCAACGAGCUGC
(..(((((((((((((((((..(((((((((((((((...((....)).((....)).....))))))).))))))))..(((((......)))))))))).)))))...)))))))..) ( -42.00)
>DroYak_CAF1 49121 119 - 1
-UGGCUUGUUGUUGUGUGAUAUGCUGAAAGGAUACGGAUACGGAUGCGACAGAAAUGGAUAACCGUGUUGUUUGCAGUCGGCGGAAAUCAAUUCACAUUACUGCAGCCUCAGUGAGCUGC
-.((((.((.((.((((((..((((((..(.(.(((.((((((.((...((....))..)).))))))))).).)..)))))).........)))))).)).)))))).(((....))). ( -34.90)
>consensus
GUGGCUUGUUGUUGUGUGAUAUGCUGUAAGGAUACGGAUACGGAUGCGACGGAAAUGGAUAACCGUGUUGUUUGCAGUCGGCGGAAAUCAAUUCGCAUUACUGCAGCCUCAGUGAGCUGC
((((((..((((((((((((..(((((((((((((((...((....)).((....)).....))))))).))))))))..(((((......)))))))))).))))...)))..)))))) (-32.56 = -32.64 +   0.08)

alignment

secondary structure

dotplot

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:02:43 2006