| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 21,104,227 – 21,104,345 |
| Length | 118 |
| Max. P | 0.902047 |
| Location | 21,104,227 – 21,104,345 |
|---|---|
| Length | 118 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 92.63 |
| Mean single sequence MFE | -28.76 |
| Consensus MFE | -25.86 |
| Energy contribution | -26.46 |
| Covariance contribution | 0.60 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.43 |
| Structure conservation index | 0.90 |
| SVM decision value | 1.02 |
| SVM RNA-class probability | 0.902047 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 21104227 118 + 23771897 CCAA--ACAAAACAAAAAUAAUUAAGAGCUUAAAGAUAGUGACAGUCAGCGAGCGGGCGAUUAAAAAUAGUCGGAAUGGAUGCUGCCCACUCCUAUUUUUAGGGUCACCCCGGGGUCAAU ....--...................((.(((((((((((((.....))..(((.(((((((((....)))))((........)))))).)))))))))))))).))(((....))).... ( -29.40) >DroSec_CAF1 154434 118 + 1 AAAA--ACAAAACAAAAAUAAUUAAGAGCUUAAAGAUAGCGACAGUCAGCGAUCGGGCGAUUAAAAAUAGUCGGAAUGGAUGCUGCCCACGCCUAUUUUUAGGGUCACCCCGGGGUCAAU ....--...................((.(((((((((((((...(.(((((.(((..((((((....))))))...))).))))))...)).))))))))))).))(((....))).... ( -30.90) >DroSim_CAF1 61994 118 + 1 CCAA--ACAAAACAAAAAUAAUUAAGAGCUUAAAGAUAGCGACAGUCAGCGAGCGAGCGAUUAAAAAUAGUCGGAAUGGAUGCUGCCCACGCCUAUUUUUAGGGUCACCCCGGGGUCAAU ....--...................((.(((((((((((((...(.(((((..((..((((((....))))))...))..))))))...)).))))))))))).))(((....))).... ( -28.20) >DroEre_CAF1 76834 120 + 1 CCUAGCAAAAAACAAAAAUAAUCAAGAGCAUAAAGAUAGCGCCAGUCAGCGAGCGGACGAUUAAAAAUAGUCGGAAUGGAUGCUGCACACGCCUAUUUUUAGGGUCACACCGGGGUCAAU (((...........................(((((((((.((..(((((((..((..((((((....))))))...))..))))).))..)))))))))))((......)))))...... ( -27.10) >DroYak_CAF1 48873 118 + 1 -CUAACAAAAAACAAAAGUAAUUAAGAGCUUAAAGAUAGCGACAGUCAGCGAGCGGACGAUUAAAAAUAGUCGGAAUGGAUGCUGCACACGCCUAUUUUUAGGGUCACCCCG-GGUCAAU -........................((.(((((((((((((...(((((((..((..((((((....))))))...))..))))).)).)).))))))))))).))......-....... ( -28.20) >consensus CCAA__ACAAAACAAAAAUAAUUAAGAGCUUAAAGAUAGCGACAGUCAGCGAGCGGGCGAUUAAAAAUAGUCGGAAUGGAUGCUGCCCACGCCUAUUUUUAGGGUCACCCCGGGGUCAAU .........................((.(((((((((((((...(.(((((..((..((((((....))))))...))..))))))...)).))))))))))).))(((....))).... (-25.86 = -26.46 + 0.60)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:02:41 2006