Locus 7973

Sequence ID 3L_DroMel_CAF1
Location 21,103,856 – 21,103,971
Length 115
Max. P 0.602735
window13020

overview

Window 0

Location 21,103,856 – 21,103,971
Length 115
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 91.75
Mean single sequence MFE -37.04
Consensus MFE -33.98
Energy contribution -33.94
Covariance contribution -0.04
Combinations/Pair 1.11
Mean z-score -1.16
Structure conservation index 0.92
SVM decision value 0.14
SVM RNA-class probability 0.602735
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 21103856 115 - 23771897
AAAGUUGCCACUGCUGCAGUUCUUAAUUAGCAAUUUGACGCAUUAUGCCGCCGAGCUUGUUGGCAUGUGCGGGCAUUAAGUCCAAA-----CCGUCUGCAGGAUUAGGACCUGAGAGGUG
........((((.((.(((.((((((((.(((....(((((((.((((((.((....)).))))))))))((((.....))))...-----..))))))..)))))))).))))).)))) ( -37.70)
>DroSec_CAF1 154045 120 - 1
AAAGUUGCCACUGCUGCAGUUCUUAAUUAGCAAUUUGACGCAUUAUGCCGCCGAGCUUGUUGGCAUGUGCGGGCAUUAAGUCCGAACAAUUCCGUCUGCAGGAUUAGGACCUGAAAGGUG
........((((....(((.((((((((.(((....(((((((.((((((.((....)).))))))))))((((.....))))..........))))))..)))))))).)))...)))) ( -36.90)
>DroSim_CAF1 61611 120 - 1
AAAGUUGCCACUGCUGCAGUUCUUAAUUAGCAAUUUGACGCAUUAUGCCGCUGAGCUUGUUGGCAUGUGCGGGCAUUAAGUCCGAACAAUUCCGUCUGCAGGAUUAGGACCUGAAAGGUG
........((((....(((.((((((((.(((....(((((((.(((((((.......).))))))))))((((.....))))..........))))))..)))))))).)))...)))) ( -36.70)
>DroEre_CAF1 76462 120 - 1
AAAUUAGCCACUGCUGCAGUUCUUAAUUAGCAAUUUGACGCAUUAUUCCGCCGAGCUUGUUGGCAUGUGCGGGCAUUAGGUCCGGAAAAUUCAGUCUACAGGAUUAGGGCCUGAAAGGUG
........((((....(((..(((((((........(((......(((((((((.....)))))......((((.....))))))))......))).....)))))))..)))...)))) ( -32.72)
>DroYak_CAF1 48492 120 - 1
GAAUUUGCCACUGCUGCAGUUCUUAAUUAGCAAUUUGACGCAUUAUGCCGGCAAGCUUGUUGGCUUGUGCGGACAUUAAGUCCGAACCAUUCUGUCUGCGGGAUUAGGACCUGAAAGGUG
........((((....(((.((((((((.(((....(((((((...(((((((....)))))))..))))((((.....))))..........))))))..)))))))).)))...)))) ( -41.20)
>consensus
AAAGUUGCCACUGCUGCAGUUCUUAAUUAGCAAUUUGACGCAUUAUGCCGCCGAGCUUGUUGGCAUGUGCGGGCAUUAAGUCCGAACAAUUCCGUCUGCAGGAUUAGGACCUGAAAGGUG
........((((....(((.((((((((.(((....(((((((.(((((..((....))..)))))))))((((.....))))..........))))))..)))))))).)))...)))) (-33.98 = -33.94 +  -0.04)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:02:40 2006