Locus 797

Sequence ID 3L_DroMel_CAF1
Location 2,374,299 – 2,374,404
Length 105
Max. P 0.597270
window1228

overview

Window 8

Location 2,374,299 – 2,374,404
Length 105
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 79.51
Mean single sequence MFE -28.09
Consensus MFE -10.74
Energy contribution -11.34
Covariance contribution 0.60
Combinations/Pair 1.00
Mean z-score -2.06
Structure conservation index 0.38
SVM decision value 0.13
SVM RNA-class probability 0.597270
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 2374299 105 - 23771897
GUGGUAUACAGUCCUAAGAAUGUAGAGAAUGCACAAGAAACCCAAACCACUGCAAACCAAAUACCAGAAGCUUCGAGCCAGGAAAC---------------UGGGAAGCCGGACUCUGAU
.((((.((((.((....)).)))).....((((.................)))).)))).....((((.(((((...((((....)---------------)))))))).....)))).. ( -23.83)
>DroSec_CAF1 863 120 - 1
GUGGUAUACAGUCCUAAGAAUGUAGAGAACGCAGAAGAAACCAAAACCUCUGCAAACCAAAUACCAGAAGCUUUGAGCCAGGAAACUGCAAAGCCGGAAACUGGGAAGCCGGACUCUGAU
.(((((((((.((....)).))))......(((((.............)))))........)))))...((((((...(((....)))))))))((((..((((....))))..)))).. ( -33.82)
>DroSim_CAF1 866 120 - 1
GUGGUAUACAGUCCUAAGAAUGUAGAGAACGCAGAAGAAACCAAAACCUCUGCAAACCAAAUACCAGAAGCUUUGAGCCAGGAAACUGGGAAGCCGGAAACUGGGAAGCCGGACUCUAAA
.(((((((((.((....)).))))......(((((.............)))))........)))))...(((((...((((....))))))))).(((..((((....))))..)))... ( -32.62)
>DroEre_CAF1 495 102 - 1
GUGGUAUACAGUCCUAAAGAUGUAGAGAACGCAGAAGAAACACAAGCCUCUGCAAACCAAAUUCCAGAAGCUUCGAAUCAGGAAAC---------------UGGGAAGCCGGA---UGAU
.((((.((((.((.....))))))......(((((.(.........).)))))..))))...(((....(((((...((((....)---------------)))))))).)))---.... ( -24.40)
>DroYak_CAF1 867 93 - 1
GUGGUAUACACUCCUAA---------GAAUGCUGAGGAAACACAAGCCUCUGCAAACCAAAUUCCAGAAGCCUCGAAUCAGGAAAC---------------UGGGAAGCCGCA---UGAU
(((((............---------...(((.((((.........)))).))).......((((((...(((......)))...)---------------))))).))))).---.... ( -25.80)
>consensus
GUGGUAUACAGUCCUAAGAAUGUAGAGAACGCAGAAGAAACCCAAACCUCUGCAAACCAAAUACCAGAAGCUUCGAGCCAGGAAAC_______________UGGGAAGCCGGACUCUGAU
.((((......(((((..............(((((.............)))))...........................(....)...............))))).))))......... (-10.74 = -11.34 +   0.60) 

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript


Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:51:27 2006