Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 2,374,299 – 2,374,404 |
Length | 105 |
Max. P | 0.597270 |
Location | 2,374,299 – 2,374,404 |
---|---|
Length | 105 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 79.51 |
Mean single sequence MFE | -28.09 |
Consensus MFE | -10.74 |
Energy contribution | -11.34 |
Covariance contribution | 0.60 |
Combinations/Pair | 1.00 |
Mean z-score | -2.06 |
Structure conservation index | 0.38 |
SVM decision value | 0.13 |
SVM RNA-class probability | 0.597270 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 2374299 105 - 23771897 GUGGUAUACAGUCCUAAGAAUGUAGAGAAUGCACAAGAAACCCAAACCACUGCAAACCAAAUACCAGAAGCUUCGAGCCAGGAAAC---------------UGGGAAGCCGGACUCUGAU .((((.((((.((....)).)))).....((((.................)))).)))).....((((.(((((...((((....)---------------)))))))).....)))).. ( -23.83) >DroSec_CAF1 863 120 - 1 GUGGUAUACAGUCCUAAGAAUGUAGAGAACGCAGAAGAAACCAAAACCUCUGCAAACCAAAUACCAGAAGCUUUGAGCCAGGAAACUGCAAAGCCGGAAACUGGGAAGCCGGACUCUGAU .(((((((((.((....)).))))......(((((.............)))))........)))))...((((((...(((....)))))))))((((..((((....))))..)))).. ( -33.82) >DroSim_CAF1 866 120 - 1 GUGGUAUACAGUCCUAAGAAUGUAGAGAACGCAGAAGAAACCAAAACCUCUGCAAACCAAAUACCAGAAGCUUUGAGCCAGGAAACUGGGAAGCCGGAAACUGGGAAGCCGGACUCUAAA .(((((((((.((....)).))))......(((((.............)))))........)))))...(((((...((((....))))))))).(((..((((....))))..)))... ( -32.62) >DroEre_CAF1 495 102 - 1 GUGGUAUACAGUCCUAAAGAUGUAGAGAACGCAGAAGAAACACAAGCCUCUGCAAACCAAAUUCCAGAAGCUUCGAAUCAGGAAAC---------------UGGGAAGCCGGA---UGAU .((((.((((.((.....))))))......(((((.(.........).)))))..))))...(((....(((((...((((....)---------------)))))))).)))---.... ( -24.40) >DroYak_CAF1 867 93 - 1 GUGGUAUACACUCCUAA---------GAAUGCUGAGGAAACACAAGCCUCUGCAAACCAAAUUCCAGAAGCCUCGAAUCAGGAAAC---------------UGGGAAGCCGCA---UGAU (((((............---------...(((.((((.........)))).))).......((((((...(((......)))...)---------------))))).))))).---.... ( -25.80) >consensus GUGGUAUACAGUCCUAAGAAUGUAGAGAACGCAGAAGAAACCCAAACCUCUGCAAACCAAAUACCAGAAGCUUCGAGCCAGGAAAC_______________UGGGAAGCCGGACUCUGAU .((((......(((((..............(((((.............)))))...........................(....)...............))))).))))......... (-10.74 = -11.34 + 0.60)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:51:27 2006