Locus 7965

Sequence ID 3L_DroMel_CAF1
Location 21,095,259 – 21,095,360
Length 101
Max. P 0.657993
window12994

overview

Window 4

Location 21,095,259 – 21,095,360
Length 101
Sequences 3
Columns 101
Reading direction reverse
Mean pairwise identity 79.86
Mean single sequence MFE -19.07
Consensus MFE -11.27
Energy contribution -11.17
Covariance contribution -0.11
Combinations/Pair 1.11
Mean z-score -2.07
Structure conservation index 0.59
SVM decision value 0.26
SVM RNA-class probability 0.657993
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 21095259 101 - 23771897
AUUUUUAGCUUAUAUCAGAAGGCAAAAGAAACUUAGGGAAUAAGUUGCGCAGUAAAUGUGUAACUUAAAGAUAUCCUUUUAAACAAUCACCUAAAUUUCUG
.......((((........))))...(((((.(((((((.(((((((((((.....)))))))))))(((.....)))........)).))))).))))). ( -25.30)
>DroSec_CAF1 145489 86 - 1
AUUCUAAGUUAAUAUCAGGAGG---------------GAAUAAGUUGCAAAGUAAAUGUGUAACUUAAAGAUAUCCUUUUAAACAUUAACCCGCCUUUCUG
...............(((((((---------------(..(((((((((.........)))))))))(((.....)))...............)))))))) ( -16.10)
>DroSim_CAF1 52982 86 - 1
AUUCUAAGUUAAUAUCAGGAGG---------------CAAUAAGUUGCAAAGUAAAUGUGUAACUUAAAGAUAUCCUUUUAAACAUUAACCCGCCUUUCUG
...............(((((((---------------(..(((((((((.........)))))))))(((.....)))..............))).))))) ( -15.80)
>consensus
AUUCUAAGUUAAUAUCAGGAGG_______________GAAUAAGUUGCAAAGUAAAUGUGUAACUUAAAGAUAUCCUUUUAAACAUUAACCCGCCUUUCUG
...............(((((((..................(((((((((.........)))))))))(((.....)))................))))))) (-11.27 = -11.17 +  -0.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:02:14 2006