Locus 7964

Sequence ID 3L_DroMel_CAF1
Location 21,095,103 – 21,095,220
Length 117
Max. P 0.614097
window12993

overview

Window 3

Location 21,095,103 – 21,095,220
Length 117
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 90.69
Mean single sequence MFE -25.34
Consensus MFE -18.56
Energy contribution -19.32
Covariance contribution 0.76
Combinations/Pair 1.05
Mean z-score -1.83
Structure conservation index 0.73
SVM decision value 0.16
SVM RNA-class probability 0.614097
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 21095103 117 + 23771897
UACGUCUAUAUGGGGAAUGGCGACAAGUGCAAAAGUGUGCACAAUAAGUGGCAUAAAAAAGAAGCCAAAGGAAACAAAGGAAGUUC---ACGAAACUGAAUUCGUAUGGAAGUUUGUAUA
.((.((((((((((....(.((....(((((......)))))......((((...........))))..(....)...........---.))...)....)))))))))).))....... ( -23.40)
>DroSec_CAF1 145333 117 + 1
UACGUCUAUAUGGGGAAUGGCGACAAGUGAAAAAGUGUGCACAAUAAGUGGCAUAAAAAAGAAGCCAAAUGAAACAAAGGCAACUC---ACGAAACUGAAUUCGUAUGGAAGAUUGUAUA
....((((((((((...((....)).((((.....(((((((.....)).)))))........(((............)))...))---)).........)))))))))).......... ( -22.80)
>DroSim_CAF1 52827 117 + 1
UACGUCUAUAUGGGGAAUGGCGACAAGUGCAAAAGUGUGCACAAUAAGUGGCAUAAAAAAGAAGCCAAAGGAAACAAAGGCAGCGC---ACGAAACUGAAUUCGUAUGGAAGAUUGUAUA
....((((((((((...((....)).((((.....(((((((.....)).)))))........(((...(....)...)))...))---)).........)))))))))).......... ( -28.40)
>DroEre_CAF1 67673 117 + 1
CUCGUCUAUAUGGGGAAUGACGACAAGUGCAAAAGUGUGCACAAUAAGUGGCAUAAAAAAGAAGCCAAAGGAAACAAAGGAACUGC---ACGGAGCUGAACUGCUAUGGAAGGUUGUAUA
.(((((............)))))...((((((...((((((.......((((...........))))..(....)........)))---))).(((......)))........)))))). ( -24.90)
>DroYak_CAF1 39553 120 + 1
UACGUCUAUAUAGGGAAUGGCGACAAGUGCAAAAGUGUGCACAGUAAGUGGCAUAAAAAAGAAGCCAAAGGAAACAAAGGAACUGUAGUACGAAACUGACCUGGCAUGGAAGGUUGUAUA
..((((............))))....((((.....((((((((((...((((...........))))..(....)......))))).))))).....(((((........))))))))). ( -27.20)
>consensus
UACGUCUAUAUGGGGAAUGGCGACAAGUGCAAAAGUGUGCACAAUAAGUGGCAUAAAAAAGAAGCCAAAGGAAACAAAGGAACUGC___ACGAAACUGAAUUCGUAUGGAAGAUUGUAUA
....((((((((((....(.((....(((((......)))))......((((...........)))).......................))...)....)))))))))).......... (-18.56 = -19.32 +   0.76)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:02:13 2006