Locus 7960

Sequence ID 3L_DroMel_CAF1
Location 21,092,682 – 21,092,802
Length 120
Max. P 0.897972
window12986

overview

Window 6

Location 21,092,682 – 21,092,802
Length 120
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 96.33
Mean single sequence MFE -31.08
Consensus MFE -30.24
Energy contribution -30.00
Covariance contribution -0.24
Combinations/Pair 1.03
Mean z-score -1.29
Structure conservation index 0.97
SVM decision value 1.00
SVM RNA-class probability 0.897972
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 21092682 120 + 23771897
UCAAAGUGCCUUAUUUGACGGCUGCCACUGAUUUGGGUAAACACACUUAAAAAUCAAAAGCAAUCAGGACCAGCUUCUGCGGCAUGAAGGAAAAAGGCAAUAAGCCGUGUAAGUGGCCAC
.....(.(((..((((((((((((((..((((((.(((......)))...))))))...((...(((((.....)))))..))............)))....)))))).))))))))).. ( -29.20)
>DroSec_CAF1 142913 120 + 1
UCAAAGUGCCUUAUUUGACGGCUGCCACUGAUUUGGGUAAACACACUCAAAAAUCAAAAGCAAUCAGGACCAGCUUCUGCGGCAUGAAGGAGAAAGGCAAUAAGCCGUGUAAGUGGCCAC
.....(.(((..((((((((((((((..((((((((((......)))))..)))))...((...(((((.....)))))..))............)))....)))))).))))))))).. ( -31.10)
>DroSim_CAF1 49975 120 + 1
UCAAAGUGCCUUAUUUGACGGCUGCCACUGAUUUGGGUAAACACACUCAAAAAUCAAAAGCAAUCAGGACCAGCUUCUGCGGCAUGAAGGAGAAGGGCAAUAAGCCGUGUAAGUGGCCAC
.....(.(((..((((((((((((((.(((((((((((......)))))............))))))......(((((.(........).))))))))....)))))).))))))))).. ( -33.00)
>DroEre_CAF1 65369 119 + 1
UCAAAGUGCCUUAUUUGACGGCUGCCACUGAUUUGGGUAAACACACUUAAAAAUCAAAAGCAAUCAGGACCAGCUUCUGCGGCAUUAAGAAA-AAGGCAAUAAGCCGUGUAAGUGGCCAC
.....(.(((..((((((((((((((..((((((.(((......)))...))))))...((...(((((.....)))))..)).........-..)))....)))))).))))))))).. ( -29.20)
>DroYak_CAF1 37136 120 + 1
UCAAAGUGCCUUAUUUGACGGCUGCCACUGAUUUGGGUAAACACACUUAAAAAUCAAAAGCAAUCAGGAGCAGCUUCUGAGGCAUUAAGAAAAAAGGCAAUAAGCCGUGUAAGUGGCCAG
((..(((((((((...((.((((((..(((((((((((......)))))............))))))..)))))))))))))))))..)).....(((.....))).............. ( -32.90)
>consensus
UCAAAGUGCCUUAUUUGACGGCUGCCACUGAUUUGGGUAAACACACUUAAAAAUCAAAAGCAAUCAGGACCAGCUUCUGCGGCAUGAAGGAAAAAGGCAAUAAGCCGUGUAAGUGGCCAC
.....(.(((..((((((((((((((..((((((((((......)))))..)))))...((...(((((.....)))))..))............)))....)))))).))))))))).. (-30.24 = -30.00 +  -0.24)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:02:06 2006