| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 2,373,879 – 2,373,981 |
| Length | 102 |
| Max. P | 0.894584 |
| Location | 2,373,879 – 2,373,981 |
|---|---|
| Length | 102 |
| Sequences | 6 |
| Columns | 107 |
| Reading direction | reverse |
| Mean pairwise identity | 79.36 |
| Mean single sequence MFE | -25.92 |
| Consensus MFE | -14.45 |
| Energy contribution | -14.82 |
| Covariance contribution | 0.36 |
| Combinations/Pair | 1.28 |
| Mean z-score | -2.38 |
| Structure conservation index | 0.56 |
| SVM decision value | 0.98 |
| SVM RNA-class probability | 0.894584 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 2373879 102 - 23771897 AACCUAUUGAAAACUAUU--CAUUUCAGACCUAUCAACAGGCCAAGCUAAUGCAGUUGGCUAUCUUAGCCACUGGUCUGUUCACGAUAU---CAAUGGGUCGACCUG .(((((((((.......(--(......))..(((((((((((((.((....))...((((((...)))))).)))))))))...)))))---))))))))....... ( -31.40) >DroSec_CAF1 446 102 - 1 AACAUAUUAAAAACUAUU--CAUUUCAGACCUAUCAACAGGCCAAGCUAAUGCAGUUGGCUAUCUUAACCACUGGUCUGUUCACGAUAU---CAAUGGGUCGACCUG ..................--.......(((((((.((((((((((((((((...)))))))...........)))))))))...(....---).)))))))...... ( -23.10) >DroSim_CAF1 449 102 - 1 AACCCAUUAAAAACUAUU--CAUUUCAGACCUAUCAACAGGCCAAGCUAAUGCAGUUGGCUAUCUUAACCACUGGUCUGUUCACGAUAU---CAAUGGGUCGACCUG .(((((((.........(--(......))..((((((((((((((((((((...)))))))...........)))))))))...)))).---.)))))))....... ( -24.10) >DroEre_CAF1 78 102 - 1 UUCCUAAUAAAAACUAUU--CAUUUCAGACCUAUCAACAGGCCAAGCUAAUGCAGUUGGCCAUCUUAGCCACUGGUUUAUUUACGAUAU---CAAUGGGUCGACCUG ..................--.......(((((((.....((((((((....))..)))))).....((((...))))............---..)))))))...... ( -21.20) >DroYak_CAF1 450 102 - 1 UGCCCAUUAAAAACCUUU--CAUUUCAGACCUAUCAACAGGCCAAGCUAAUGCAGUUGGCCAUCUUAGCCACUGGUUUAUUCACAAUAU---CAAUGGGUCGACCGG ..................--.......(((((((.....((((((((....))..)))))).....((((...))))............---..)))))))...... ( -21.20) >DroMoj_CAF1 1038 96 - 1 AACCU--------CUAUUCACAUUGCAGACCUUCCAGCAUGCCAAACUCAUGCAGGUGGCCAUUUUGAGCCUCGGCUUGAUUAUGGCCACCAC---GACACAGAGUG ...((--------((..((.................(((((.......))))).(((((((((.(..(((....)))..)..)))))))))..---))...)))).. ( -34.50) >consensus AACCUAUUAAAAACUAUU__CAUUUCAGACCUAUCAACAGGCCAAGCUAAUGCAGUUGGCCAUCUUAACCACUGGUCUGUUCACGAUAU___CAAUGGGUCGACCUG ...........................(((((((.....((((((((....))..)))))).............(((.......))).......)))))))...... (-14.45 = -14.82 + 0.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:51:26 2006