Locus 7959

Sequence ID 3L_DroMel_CAF1
Location 21,092,159 – 21,092,279
Length 120
Max. P 0.573564
window12985

overview

Window 5

Location 21,092,159 – 21,092,279
Length 120
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 96.67
Mean single sequence MFE -18.75
Consensus MFE -17.48
Energy contribution -18.08
Covariance contribution 0.60
Combinations/Pair 1.00
Mean z-score -1.14
Structure conservation index 0.93
SVM decision value 0.08
SVM RNA-class probability 0.573564
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 21092159 120 - 23771897
UCCUUUAAUUUUAUCCGACCCAAACUGAGCCGCUGAGUAAUUUUUCUAUUUUCUGCUUUGUUGCUCGCUUUCAAUUGCACACCCAUGUUGACCAAUGUCGACAUUAACCCAAAUCCAGCA
..........................((((.((.(((((..............))))).)).))))(((.....(((.......((((((((....)))))))).....)))....))). ( -20.14)
>DroSec_CAF1 142362 120 - 1
UCCUUUAAUUUUAUCCGACCCAAACUGAGCCGCUCAGUAAUUUUUCUAUUUUCUGCUUUGUUGCUCGCUUUCAAUUGCACACCCAUGUUGACCAAUGUCGACAUUAACCCAAAUCCAGCA
..........................((((.((..((((..............))))..)).))))(((.....(((.......((((((((....)))))))).....)))....))). ( -18.74)
>DroSim_CAF1 49426 120 - 1
UCCUUUAAUUUUACCCGACCCAAACUGAGCCGCUGAGUAAUUUUUCUAUUUUCUGCUUUGUUGCUCGCUUUCAAUUGCACACCCAUGUUGACCAAUGUCGACAUUAACCCAAAUCCAGCA
..........................((((.((.(((((..............))))).)).))))(((.....(((.......((((((((....)))))))).....)))....))). ( -20.14)
>DroEre_CAF1 64628 120 - 1
UCCUUUAAAUUUAUCUGACCCAAACUGAGCCGCUGAGUAAUUUUUCUAUUUUCUCCUUUGUUGCUCGCUUUCAAUUGCACACCCAUGUUGACCAAUGUCGACAUUAACCCAAAUCCAACA
..........................((((.((.(((.(((......)))..)))....)).))))((........))......((((((((....))))))))................ ( -17.90)
>DroYak_CAF1 36507 120 - 1
UCCUUUAAUUUUAUCUGACCCAAACUGAGCCGCUGAGUAAUUUUUCUAUUUUCUGCUUUGUUGCUCGCCUUCAAUUGCACACCCAUGUUGACCAAUGUGGACAUUAACCCAAAUCCAAAA
..........................((((.((.(((((..............))))).)).))))((........))....(((((((....))))))).................... ( -16.84)
>consensus
UCCUUUAAUUUUAUCCGACCCAAACUGAGCCGCUGAGUAAUUUUUCUAUUUUCUGCUUUGUUGCUCGCUUUCAAUUGCACACCCAUGUUGACCAAUGUCGACAUUAACCCAAAUCCAGCA
..........................((((.((.(((((..............))))).)).))))((........))......((((((((....))))))))................ (-17.48 = -18.08 +   0.60)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:02:05 2006