Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 21,091,325 – 21,091,445 |
Length | 120 |
Max. P | 0.846069 |
Location | 21,091,325 – 21,091,445 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 90.17 |
Mean single sequence MFE | -39.30 |
Consensus MFE | -29.88 |
Energy contribution | -31.08 |
Covariance contribution | 1.20 |
Combinations/Pair | 1.14 |
Mean z-score | -2.01 |
Structure conservation index | 0.76 |
SVM decision value | 0.77 |
SVM RNA-class probability | 0.846069 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 21091325 120 - 23771897 AAAUAAACUAAGCAGCUGGGCAGACAUAGCCAGCGUGGUUGUUGUAGCCGGUGUUGUUGCGACCAUAUCGAUGAUGGCUCAACCUUGCCAAGUAGUUGGUGGCAUUAGUUGUUUUGUAGU ......((.((((((((((((.......((((((((((((((..((((....))))..))))))))........((((........))))....)))))).)).)))))))))).))... ( -39.10) >DroSec_CAF1 141504 109 - 1 AAAUAAACUAAGCAGCUGGGCAGACAUAGCCAGCGUGGUUGUUGUAGCC-----------GACCAUAUCGAUGAUGGCUCAACCUUGCCAAGUAGUUGGUGGCAUUAGUUGGUUUGUAGU ......((.((.(((((((((.......((((((.((((.((((.((((-----------(..(((....))).)))))))))...))))....)))))).)).))))))).)).))... ( -33.80) >DroSim_CAF1 48550 120 - 1 AAAUAAACUAAGCAGCUGGGCAGACAUAGCCAGCGUGGUUGUUGUAGCCGCUAUUGUUGCGACCAUAUCGAUGAUGGCUCAACCUUGCCAAGUAGUUGGUGGCAUUAGUUGGUUUGUAGU ..(((((((((((((((((.(.......))))))(((((((...)))))))...)))(((.((((.....((..((((........)))).))...)))).)))....)))))))))... ( -37.40) >DroEre_CAF1 63358 120 - 1 AAAUAAACUAAGCAGCUGGCCAGACAUGGCCGGCGUGGUUGUUGUAGCUGGUGUUGUUGUUACCAUAUCGACGAGGGCUCAACAUUGCCAAGUAGUUGGUGGCGUUAGUUGGUUGGUAGU ......(((((.((((((((..((((..((((((............))))))..))))(((((((.....((...(((........)))..))...))))))))))))))).)))))... ( -43.40) >DroYak_CAF1 35515 120 - 1 AAAUAAGCUAGGCAGCUGGCCAGACAUGGCCAGCGUGGUUGUUGUAGCUGGUGUUGUUGUUACCAUAUCGAUGAUGGCUCAACCUUGCCAAGUAGUUGGUGGCAUUAGUUGGGUUGUAGU .....((((((((.((((((((....))))))))...)))....)))))((((.......)))).........(..(((((((..(((((.........)))))...)))))))..)... ( -42.80) >consensus AAAUAAACUAAGCAGCUGGGCAGACAUAGCCAGCGUGGUUGUUGUAGCCGGUGUUGUUGCGACCAUAUCGAUGAUGGCUCAACCUUGCCAAGUAGUUGGUGGCAUUAGUUGGUUUGUAGU .....((((((((.(((((..........)))))((((((((..((((....))))..))))))))((((((..((((........))))....)))))).)).)))))).......... (-29.88 = -31.08 + 1.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:02:00 2006