Locus 7954

Sequence ID 3L_DroMel_CAF1
Location 21,081,537 – 21,081,657
Length 120
Max. P 0.918531
window12976

overview

Window 6

Location 21,081,537 – 21,081,657
Length 120
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 93.00
Mean single sequence MFE -38.27
Consensus MFE -31.84
Energy contribution -32.48
Covariance contribution 0.64
Combinations/Pair 1.04
Mean z-score -1.73
Structure conservation index 0.83
SVM decision value 1.12
SVM RNA-class probability 0.918531
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 21081537 120 + 23771897
UUGUCCACUGCCCGGCGCAGCACCACCCUCUCAUCGGGUUCUCCCUCCUCUCGCGGAGCAGCUGACUUCCCACCCAUGGUGCCGCCUUCUGGAGGCGCCUCCUCUUUCGUGUCGCUUCCC
............(((((((((...((((.......)))).....((((......))))..)))..............((((((.((....)).)))))).........))))))...... ( -35.30)
>DroSec_CAF1 136887 120 + 1
UUGUCCACCGCCCGGCGCAGCACUACCCUCUCAUCGGGUUCCCCCUCCUCUCCCGGAGCAGCUGAGUUCCCACCCAUGGUGCCGCCUUCUGGAGGCGCCUCCUCUUUCGUGUUGCUUCCC
..(((........)))(((((((......((((.((((...)))((((......))))..).))))...........((((((.((....)).)))))).........)))))))..... ( -37.20)
>DroSim_CAF1 42993 120 + 1
UUGUCCACCGCCCGGCGCAGCACUACCCUCUCAUCGGGUUCCCCCUCCUCUCCCGGAGCAGCUGAGUUCCCACCCAUGGUGCCGCCUUCUGGAGGCGCCUCCUCUUUCGUGUUGCUUCCC
..(((........)))(((((((......((((.((((...)))((((......))))..).))))...........((((((.((....)).)))))).........)))))))..... ( -37.20)
>DroEre_CAF1 58988 120 + 1
UUGUCCACCGCCCGGCGCAGCACCACCCUCUCAUCGGGGUCCCCCCUCUCUGCCGGCGCAACUGAAUUCCCACCCAUGGUGCCGCCUUCUGGUGGCGCCUCCUCUUUCGUGUUGCAUCCC
.........(((.((((.((....(((((......))))).......)).)))))))(((((((((...........(((((((((....)))))))))......)))).)))))..... ( -42.83)
>DroYak_CAF1 31066 120 + 1
UUGUCCACCGCCCGGCGCAGCACCACCCUCUCAUCGGGGUCCCCCCCCUCCCCCGGAGCAGCUGAAUUCCCGCCCAUGGAGCCGCCUUCUGGUGGCGCCUCCUCUUUCGUGUUGCUUUCC
..(((........)))(((((((............((((.....))))......((((..((.....(((.......)))((((((....))))))))))))......)))))))..... ( -38.80)
>consensus
UUGUCCACCGCCCGGCGCAGCACCACCCUCUCAUCGGGUUCCCCCUCCUCUCCCGGAGCAGCUGAAUUCCCACCCAUGGUGCCGCCUUCUGGAGGCGCCUCCUCUUUCGUGUUGCUUCCC
..(((........)))(((((((............(((.((...((((......)))).....))...)))......((((((.((....)).)))))).........)))))))..... (-31.84 = -32.48 +   0.64)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:01:56 2006