Locus 7950

Sequence ID 3L_DroMel_CAF1
Location 21,078,926 – 21,079,045
Length 119
Max. P 0.567304
window12967

overview

Window 7

Location 21,078,926 – 21,079,045
Length 119
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 84.88
Mean single sequence MFE -36.90
Consensus MFE -21.82
Energy contribution -22.10
Covariance contribution 0.28
Combinations/Pair 1.29
Mean z-score -2.20
Structure conservation index 0.59
SVM decision value 0.07
SVM RNA-class probability 0.567304
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 21078926 119 + 23771897
ACCAAGAAAGGCGGAGGUUUCGCCUACCUGGUCUCUUCGUGGAAAAAUGUCA-CGGAGAGUCCCUUGAAAUAGCGCUAACAACCUAUUAAGAGGGGCAUUUGCGCAUUUCAAGUUUCAUU
.....((((((((((...)))))))....((.((((((((((.......)))-))))))).))((((((((.((((......(((......))).......)))))))))))).)))... ( -43.72)
>DroSec_CAF1 134187 119 + 1
ACCAAGAAAGGCGGAGGUUUCGCCUACCUGUGCUCCUCAUGGAAAAAUGUCA-CUGACAGUCCCUCAAAAUAGCGCUAACAAGCUAUUAAGAGGGGCAUUUGCGCAUUUGAAGUUUCAUU
.....((((((((((...)))))))...((((((((....)))....((((.-..))))(((((((..((((((........))))))..)))))))....)))))........)))... ( -39.70)
>DroSim_CAF1 40467 119 + 1
ACCAAGAAAGGCGGAGGUUUCGCCUACCUGUGCUCCUCAUGGAAAAAUGUCA-CUGAGAGUCCCUCAAAAUAGCGCUAACAACCUAUUAAGAGGGGCAUUUGCGCAUUUGAAGUUUCAUU
.....((((((((((...)))))))...(((((..((((..((......)).-.)))).(((((((..(((((.(.......))))))..)))))))....)))))........)))... ( -34.30)
>DroEre_CAF1 56757 119 + 1
ACCAGGAAAGGCUGAGGUUUCUUCUACCUGCUUUCUUCAUGGAAAACAGUCACUUGGGAGUCCCUCAGAAGAGCGCUAACAACUUGUUAGGAGGGGCAUUUGCGCAUUUGAAGUUUCU-U
.(((((...(((((((((.......))))..(((((....))))).))))).)))))..(((((((.(.....).(((((.....)))))))))))).....................-. ( -33.30)
>DroYak_CAF1 28309 119 + 1
ACAGAGAAAGGCUGAGGUUUCUCCUACCUGCUCCCUUUAUACAAAACUGU-ACUUGGGAGUCCCUCGAAAUAGCGCUUUCAACUUGUUAAGAGGGACAUUCGCGCAUUUGAAGUUUCAGU
..........(((((..((((.......(((((((....((((....)))-)...))))(((((((....(((((.........))))).)))))))....))).....))))..))))) ( -33.50)
>consensus
ACCAAGAAAGGCGGAGGUUUCGCCUACCUGCUCUCUUCAUGGAAAAAUGUCA_CUGAGAGUCCCUCAAAAUAGCGCUAACAACCUAUUAAGAGGGGCAUUUGCGCAUUUGAAGUUUCAUU
.(((.(((.((...((((.......))))...)).))).)))..((((((....((((.(((((((..(((((..........)))))..))))))).)))).))))))........... (-21.82 = -22.10 +   0.28)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:01:47 2006