Locus 795

Sequence ID 3L_DroMel_CAF1
Location 2,371,369 – 2,371,466
Length 97
Max. P 0.816845
window1226

overview

Window 6

Location 2,371,369 – 2,371,466
Length 97
Sequences 5
Columns 97
Reading direction reverse
Mean pairwise identity 92.99
Mean single sequence MFE -25.34
Consensus MFE -23.83
Energy contribution -23.47
Covariance contribution -0.36
Combinations/Pair 1.14
Mean z-score -1.23
Structure conservation index 0.94
SVM decision value 0.67
SVM RNA-class probability 0.816845
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 2371369 97 - 23771897
AUUCCAUGCAACCUCAUCAUGAGGUUCGCUUCGAACAUGUUUGGAAAUAUCUUUGAUAACCAACGGAUCAAACAGGUUGCGGACGAUUGGGAAUGUU
(((((..((((((((.....)))))).))(((((((.((((((.....(((((((.....))).)))))))))).))).))))......)))))... ( -25.90)
>DroSec_CAF1 120075 97 - 1
AUUCCAUGCAACCUCAUCAUGAGGUUCGCUUCGAACAUGUUUGGAAAUAUCUCUGAUAGCCGCCGGAUCAAACAGGUUGCGCACGAUUGGGAAUGUU
.(((((.(((..(((.....)))(((((...))))).))).)))))((((..(..((.((.(((..........))).)).....))..)..)))). ( -24.80)
>DroSim_CAF1 121168 97 - 1
AUUCCAUGCAACCUCAUCAUGAGGUUCGCUUCGAACAUGUUUGGAAAUAUCUCUGAUAGCCGCCGGAUCAAACAGGUUGCGCACGAUUGGGAAUGUU
.(((((.(((..(((.....)))(((((...))))).))).)))))((((..(..((.((.(((..........))).)).....))..)..)))). ( -24.80)
>DroEre_CAF1 127386 97 - 1
AUUCCAUGCAACCUCAUCAUGAGGUUCGCUUCGAACAUGUUUGAAAAUAUCUCUGAUAACCACCGGUUCAUGCAGGUUCCGCUCGAUUUGGAAUGUU
((((((.((((((((.....)))))).))...((((.(((.(((...((((...))))(((...)))))).))).)))).........))))))... ( -23.90)
>DroYak_CAF1 124579 97 - 1
AUUCCAUGCAACCUCAUCAUGAGGUUCGCUUCGAACAUGUUUGAAAAUAUCUCUGAUAACCACCGGAUCAGGCAGGUUGCGCCCAAUUUGGAAUGUU
((((((((((((((.((((.(((((....((((((....))))))...))))))))).....((......)).)))))))).......))))))... ( -27.31)
>consensus
AUUCCAUGCAACCUCAUCAUGAGGUUCGCUUCGAACAUGUUUGGAAAUAUCUCUGAUAACCACCGGAUCAAACAGGUUGCGCACGAUUGGGAAUGUU
(((((..((((((((.....)))))).))..(((((.(((((((.......((((........))))))))))).))).))........)))))... (-23.83 = -23.47 +  -0.36)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:51:25 2006