Locus 7949

Sequence ID 3L_DroMel_CAF1
Location 21,078,656 – 21,078,776
Length 120
Max. P 0.748284
window12966

overview

Window 6

Location 21,078,656 – 21,078,776
Length 120
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 98.83
Mean single sequence MFE -33.66
Consensus MFE -33.66
Energy contribution -33.66
Covariance contribution 0.00
Combinations/Pair 1.00
Mean z-score -1.27
Structure conservation index 1.00
SVM decision value 0.47
SVM RNA-class probability 0.748284
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 21078656 120 - 23771897
CCAACAUCGUGAACAAUCAAAUUCGCAGCGAAAUGUACAAGGGCACGGACCCCACGGUGGAGACGCAGUUCAACAAAUUGUACGUUUAUCCCAUGGACAAUGUGAGCAUUUUGUUCGCCG
........((((((((.....((((((...(((((((((((((......)))....(((....)))...........)))))))))).(((...)))...))))))....)))))))).. ( -33.80)
>DroSec_CAF1 133917 120 - 1
CCAACAUCGUGAACAAUCAAAUUCGCAGCGAAAUGUACAAGGGCACGGAUCCCACGGUGGAGACGCAGUUCAACAAAUUGUACGUUUAUCCCAUGGACAAUGUGAGCAUUUUGUUCGCCG
........((((((((.....((((((...(((((((((((((.......)))...(((....)))...........)))))))))).(((...)))...))))))....)))))))).. ( -33.60)
>DroSim_CAF1 40197 120 - 1
CCAACAUCGUGAACAAUCAAAUUCGCAGCGAAAUGUACAAGGGCACGGAUCCCACGGUGGAGACGCAGUUCAACAAAUUGUACGUUUAUCCCAUGGACAAUGUGAGCAUUUUGUUCGCCG
........((((((((.....((((((...(((((((((((((.......)))...(((....)))...........)))))))))).(((...)))...))))))....)))))))).. ( -33.60)
>DroEre_CAF1 56481 120 - 1
CCAACAUCGUGAACAAUCAAAUUCGCAGCGAAAUGUACAAGGGCACGGACCCCACGGUGGAGACGCAGUUCAACAAAUUGUACGUUUAUCCCAUGGACAAUGUGAGCAUUUUGUUCGCCG
........((((((((.....((((((...(((((((((((((......)))....(((....)))...........)))))))))).(((...)))...))))))....)))))))).. ( -33.80)
>DroYak_CAF1 28038 120 - 1
CCAACAUUGUGAACAAUCAAAUUCGCAGCGAAAUGUACAAGGGCACAGACCCCACGGUGGAGACGCAGUUCAACAAAUUGUACGUUUAUCCCAUGGACAAUGUGAGCAUUUUGUUCGCCG
........((((((((.....((((((...(((((((((((((......)))....(((....)))...........)))))))))).(((...)))...))))))....)))))))).. ( -33.50)
>consensus
CCAACAUCGUGAACAAUCAAAUUCGCAGCGAAAUGUACAAGGGCACGGACCCCACGGUGGAGACGCAGUUCAACAAAUUGUACGUUUAUCCCAUGGACAAUGUGAGCAUUUUGUUCGCCG
........((((((((.....((((((...(((((((((((((.......)))...(((....)))...........)))))))))).(((...)))...))))))....)))))))).. (-33.66 = -33.66 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:01:46 2006