Locus 7944

Sequence ID 3L_DroMel_CAF1
Location 21,075,301 – 21,075,410
Length 109
Max. P 0.608255
window12955

overview

Window 5

Location 21,075,301 – 21,075,410
Length 109
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 80.23
Mean single sequence MFE -38.14
Consensus MFE -27.32
Energy contribution -28.66
Covariance contribution 1.34
Combinations/Pair 1.16
Mean z-score -1.54
Structure conservation index 0.72
SVM decision value 0.15
SVM RNA-class probability 0.608255
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 21075301 109 + 23771897
UGUGUGUGUGGGGGGGGGGAGUAGGCCCUUCAUAAUUGGGUCUCCGCCUGGGUUCCUUAGAGCCUCUCGAUAUUGU-------UGC----UUGUUUCUGGUUGCCGCCCAGGCCACCAUC
.(((.((.((((.(((.((((...((((.........)))))))).))).(((.((...((((..(........).-------.))----))......))..))).)))).))))).... ( -38.60)
>DroSec_CAF1 130549 101 + 1
------------GGGAGGUGGUAGGCCCUUCAUAAUUGGGUCUCCGCCUGGGUUCCUUGGAGCCUUUCGAUAUUGU-------UGGUGGUUGGUUUCUGGUUGCCGCCCAGGCCACCAUC
------------...((((((.((((((.........))))))))))))((((((....))))))...........-------.((((((.(((..((((.......))))))))))))) ( -42.00)
>DroSim_CAF1 36792 97 + 1
------------GGGGGGUGGUAGGCCCUUCAUAAUUGGGUCUCCGCCUGGGUUCCUUGGAGCCUCUCGAUAUUGU-------UGC----UGGUUUCUGGUUGCCGCCCAGGCCACCAUC
------------(((((((((.((((((.........))))))))))))((((((....)))))))))........-------...----.......((((.(((.....))).)))).. ( -40.20)
>DroEre_CAF1 53188 98 + 1
------------G----GCGGUGGGCCCUUCAUAAUUGGGCCUCCGC-CGGGUUCCUUGCAGACUCCC-AUAAUGUUGCUGGUUGC----UGGUUUCUGGUUGCCGCCCAGGCCACCAUC
------------(----((((.((((((.........))))))))))-)(((..((..((((.((..(-(......))..))))))----.))..)))(((.(((.....))).)))... ( -41.50)
>DroYak_CAF1 24682 92 + 1
------------G----GCGGUAGGCGCUUCAUAAUUGGGUCUCCGC-UGGGUUCCUUGCAGCCUCUCUAUAUUAU-------GGC----UGGUUUCUGGUUGCCGCCCUGACCACCAUC
------------(----(.((((((.((....((((..((...((((-.((....)).))((((............-------)))----)))..))..))))..))))).))).))... ( -28.40)
>consensus
____________GGG_GGCGGUAGGCCCUUCAUAAUUGGGUCUCCGCCUGGGUUCCUUGGAGCCUCUCGAUAUUGU_______UGC____UGGUUUCUGGUUGCCGCCCAGGCCACCAUC
...............((((((.((((((.........))))))))))))((((((....))))))................................((((.(((.....))).)))).. (-27.32 = -28.66 +   1.34)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:01:35 2006