Locus 7943

Sequence ID 3L_DroMel_CAF1
Location 21,074,906 – 21,075,026
Length 120
Max. P 0.594184
window12954

overview

Window 4

Location 21,074,906 – 21,075,026
Length 120
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 94.66
Mean single sequence MFE -34.94
Consensus MFE -31.06
Energy contribution -31.66
Covariance contribution 0.60
Combinations/Pair 1.06
Mean z-score -1.19
Structure conservation index 0.89
SVM decision value 0.12
SVM RNA-class probability 0.594184
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 21074906 120 - 23771897
UACGAGGUGGAGCCGGGAAACGGCGGCUGUCGAGACAAUCACCUCAAAAUGCUGAACGUUAAGACUUACCUCAUCAAGCGCACUGAGCCAUUGAGGUAAGUGAAAAGUGCACGAAGCGAA
...(((((((((((((....)..)))))((....))..)))))))....((((...(((((..((((((((((....((.......))...))))))))))......)).))).)))).. ( -39.20)
>DroSec_CAF1 130161 120 - 1
UACGAGGUGGAACCGGGAAACGGCGGCUGUCGGGACAAUCACCUCAAAAUGCUGAACGUUAAGACUUACCUCAUCAAGCGCACUGAGCCAUUGAGGUAAGUGAAAAGUGCACAAAGUGAA
((((((((((..((.(....)(((....))))).....)))))))....(((...((......((((((((((....((.......))...)))))))))).....)))))....))).. ( -34.00)
>DroSim_CAF1 36404 120 - 1
UACGAGGUGGAACCGGGAAACGGCGGCUGUCGGGACAAUCACCUCAAAAUGCUGAACGUUAAGACUUACCUCAUCAAGCGCACUGAGCCAUUGAGGUAAGUGAAAAGUGCACAAAGCGAA
...(((((((..((.(....)(((....))))).....)))))))....((((..((......((((((((((....((.......))...)))))))))).....))......)))).. ( -35.10)
>DroEre_CAF1 52846 118 - 1
UACGAGGUGGAGCCGGGAAACGGUGGCAGUCGGGACAAUCACCUCAAAAUGCUGAACGUUAAGACUUUCCUCAUCAAGCGCACUGAGCCAUUGAGGUAAGUGA--AGUGCACAGAGCGAA
...(((((((.(((((....)..)))).((....))..)))))))....((((....((....((((.(((((....((.......))...))))).))))..--...))....)))).. ( -32.20)
>DroYak_CAF1 24307 119 - 1
UACGAGGUGGAGCCGGGAAACGGUGGCAGUCGGGACAAUCACCUCAAAAUGCUGAACGUUAAGACUUUCCUCAUCAAGCGCACUGAGCCAUUAAGGUAAGUGAG-AGCGCACACAGCGAA
...(((((((.(((((....)..)))).((....))..)))))))....(((((........((......)).....((((.((.((((.....)))...).))-.))))...))))).. ( -34.20)
>consensus
UACGAGGUGGAGCCGGGAAACGGCGGCUGUCGGGACAAUCACCUCAAAAUGCUGAACGUUAAGACUUACCUCAUCAAGCGCACUGAGCCAUUGAGGUAAGUGAAAAGUGCACAAAGCGAA
...(((((((.(((((....)..)))).((....))..)))))))....((((....((....((((((((((....((.......))...)))))))))).......))....)))).. (-31.06 = -31.66 +   0.60)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:01:34 2006