Locus 7942

Sequence ID 3L_DroMel_CAF1
Location 21,074,343 – 21,074,463
Length 120
Max. P 0.538339
window12953

overview

Window 3

Location 21,074,343 – 21,074,463
Length 120
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 96.67
Mean single sequence MFE -36.50
Consensus MFE -32.96
Energy contribution -32.96
Covariance contribution 0.00
Combinations/Pair 1.07
Mean z-score -1.19
Structure conservation index 0.90
SVM decision value 0.01
SVM RNA-class probability 0.538339
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 21074343 120 + 23771897
CCACCUCCGGUGCCACCUGCUCCUCCCAUUACGCCACAGCCGUUCCUAAUCCUGCGGCUGUCCAUGGCCACGCCCUCGACCACAUUGGGCAGGGAGUUCAGGGAUAUGUUCUUCUUCUGU
.((((...))))...((((...(((((.....(((((((((((..........))))))))....)))...((((...........)))).)))))..)))).................. ( -41.40)
>DroSec_CAF1 129598 120 + 1
CCGCCUCCGGCGCCACCUGCUCCUCCCAUUACGCCACAGCCGUUCCUAAUCCUGCGACUGUCCAUGGCCACGCCCUCGACCACAUUGGGCAGGGAGUUCAGGGAUAUGUUCUUCUUCUGC
.((((...))))...((((...(((((.....(((((((.(((..........))).))))....)))...((((...........)))).)))))..)))).................. ( -35.80)
>DroSim_CAF1 35830 120 + 1
CCGCCUCCGGCGCCACCUGCUCCUCCCAUUACGCCACAGCCGUUCCUAAUCCUGCGACUGUCCAUGGCCACGCCCUCGACCACAUUGGGCAGGGAGUUCAGGGAUAUGUUCUUCUUCUGC
.((((...))))...((((...(((((.....(((((((.(((..........))).))))....)))...((((...........)))).)))))..)))).................. ( -35.80)
>DroEre_CAF1 52167 120 + 1
CCGCCUCCGGCGCCACCUGCACCUCCCAUUACGCCACAGCCGUUCCUAGUCCUGCGACUGUCCAUGGCCACGCCCUCGACCACAUUGGGCAGGGAGUUCAGGGAUAUGUUCUUCUUCUGC
.((((...))))...((((...(((((...........(((((...(((((....)))))...)))))...((((...........)))).)))))..)))).................. ( -37.00)
>DroYak_CAF1 23621 120 + 1
CCGCCUCCGUUGCCACCUGCAGCUCCCAUUACCCCACAGCCGUUCCUAAUCCUGCGACUGUCCAUGGCCACGCCCUCGACCACAUUGGGCAGGGAGUUCAGGGAUAUGUUCUUCUUCUGC
...............((((.(((((((....((..((((.(((..........))).))))....))....((((...........)))).))))))))))).................. ( -32.50)
>consensus
CCGCCUCCGGCGCCACCUGCUCCUCCCAUUACGCCACAGCCGUUCCUAAUCCUGCGACUGUCCAUGGCCACGCCCUCGACCACAUUGGGCAGGGAGUUCAGGGAUAUGUUCUUCUUCUGC
.((((...))))...((((...(((((.....(((((((.(((..........))).))))....)))...((((...........)))).)))))..)))).................. (-32.96 = -32.96 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:01:33 2006