Locus 7940

Sequence ID 3L_DroMel_CAF1
Location 21,071,847 – 21,071,967
Length 120
Max. P 0.916799
window12947

overview

Window 7

Location 21,071,847 – 21,071,967
Length 120
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 95.92
Mean single sequence MFE -32.00
Consensus MFE -29.56
Energy contribution -29.80
Covariance contribution 0.24
Combinations/Pair 1.04
Mean z-score -1.42
Structure conservation index 0.92
SVM decision value 1.11
SVM RNA-class probability 0.916799
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 21071847 120 + 23771897
UACCAAAGGACCACUGCAGAUGCCCACACGCAGCUGGAAGUUAUUGAAGGCAUCCCCAUUGAUCUCCUCCAGCUUUUGCUUCAUGGCAAAUGCGAACUCCACCAGGUCGCAGACACUAUC
........((((...((....)).....((((((((((.(..((..(.((.....)).)..))..).)))))).((((((....))))))))))..........))))............ ( -31.80)
>DroSec_CAF1 127117 120 + 1
CACCAAAGGACCACUGCAGAUUCCCACACGCAGCUGGAAGUUAUUGAAGGCAUCCCCAUUGAUCUCCUCCAGCUUUUGCUUCAUGGCAAAGGCGAACUCCACUAGGUCGCAGACACUAUC
........((((..((.((.(((((......(((((((.(..((..(.((.....)).)..))..).)))))))((((((....)))))))).))))).))...))))............ ( -31.30)
>DroSim_CAF1 33355 120 + 1
UACCAAAGGACCACUGCAGAUGCCAACACGCAGCUGGAAGUUAUUGAAGGCAUCCCCAUUGAUCUCCUCCAGCUUUUGCUUCAUGGCAAAGGCGAACUCUACCAGGUCGCAGACACUAUC
.............((((.((((((..((...(((.....)))..))..))))))......(((((......(((((((((....)))))))))..........)))))))))........ ( -32.19)
>DroEre_CAF1 49747 120 + 1
UACCAACGGACCACUGCAGAUGCCCACACGCAGCUGGAAGUUGUUGAAUGCAUCCCCGUUGAUCUCCUCCAGCUUUUGCUUCAUGGCAAAGGCGAACUCAACCAGGUCACAGACACUAUC
........((((......(((((...((.(((((.....)))))))...)))))...(((((..((.....(((((((((....)))))))))))..)))))..))))............ ( -33.10)
>DroYak_CAF1 20167 120 + 1
UACCAAAGGACCACUGCAGAUGCCCACACGCAGCUGGAAGUUAUUGAAGGCAUCCCCAUUGAUCUCCUCCAGCUUUUGCUUCAUGGCAAAGGCGAACUCCACCAGGUCACAGACACUAUC
........((((...((....)).....((((((((((.(..((..(.((.....)).)..))..).)))))))((((((....)))))).)))..........))))............ ( -31.60)
>consensus
UACCAAAGGACCACUGCAGAUGCCCACACGCAGCUGGAAGUUAUUGAAGGCAUCCCCAUUGAUCUCCUCCAGCUUUUGCUUCAUGGCAAAGGCGAACUCCACCAGGUCGCAGACACUAUC
........((((...((....)).....((((((((((.(..((..(.((.....)).)..))..).)))))))((((((....)))))).)))..........))))............ (-29.56 = -29.80 +   0.24)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:01:27 2006