Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 2,370,211 – 2,370,337 |
Length | 126 |
Max. P | 0.999894 |
Location | 2,370,211 – 2,370,305 |
---|---|
Length | 94 |
Sequences | 6 |
Columns | 111 |
Reading direction | forward |
Mean pairwise identity | 78.59 |
Mean single sequence MFE | -29.62 |
Consensus MFE | -20.70 |
Energy contribution | -22.32 |
Covariance contribution | 1.61 |
Combinations/Pair | 1.21 |
Mean z-score | -1.07 |
Structure conservation index | 0.70 |
SVM decision value | 0.02 |
SVM RNA-class probability | 0.544632 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 2370211 94 + 23771897 CACUUUCUCUAAGUGUAAGUCUGGAUCUGGUCCUAAGUUCCA--UUGCC---UCCCGCCCCUUCCUUUAUGGU-UUUUUGAGCAGCUGCAUGAGGGGCGG----------- (((((.....)))))......((((.((.......)).))))--.....---..(((((((((((.....)).-.......((....))..)))))))))----------- ( -27.50) >DroSec_CAF1 118906 93 + 1 CACUUUCUCUAAGUGUAAGUCUGGAUCUGGUCCUAAGACCCA--UUGCC---UCCCGCCCCUUCCUUUAUGGU-U-UUUGAGCAGCUGCAUGAGGGGCGG----------- (((((.....))))).......((....((((....))))..--...))---..(((((((((((.....)).-.-.....((....))..)))))))))----------- ( -28.90) >DroSim_CAF1 119989 93 + 1 CACUUUCUCUAAGUGUAAGUCUGGAUCUGGUCCUAAGACCCA--UUGCC---UCCCGCCCCUUCCUUUAUGGU-U-UUUGAGCAGCUGCAUGAGGGGCGG----------- (((((.....))))).......((....((((....))))..--...))---..(((((((((((.....)).-.-.....((....))..)))))))))----------- ( -28.90) >DroEre_CAF1 126225 93 + 1 UACUUUCUUCAAGUGUAAGCCUGGAUCUGGUCCUAAGAUCCA--UUGCC---UCCCGCCCCUUCCUU-AUGGUUU-UUUGAGCAGCUGCAGGAGAGGCGG----------- (((((.....)))))...((((((((((.......)))))).--....(---(((.((..((..(((-(......-..)))).))..)).))))))))..----------- ( -26.30) >DroYak_CAF1 123403 93 + 1 UACUUCCUCCAAGUGUAAGCCUGGAUCUGGUCCUAAGAUCCA--UUGCC---UCCCGCCCCUUCCUUUAUGGU-U-UCUGAGCAGCUGUAGGUGGGGCGG----------- (((((.....)))))...((.(((((((.......)))))))--..)).---..(((((((..(((..(((((-(-.......))))))))).)))))))----------- ( -31.30) >DroAna_CAF1 113552 104 + 1 CCUUUUCUCACGGUGUGCCCCUGGGAUGGGACCUAAGAUCCCGCCUGCAUCUCCCCGCCCCACCCUUC------U-UCUGAGCAGCUUUUUGGGGGGCGAUGGAGUAGGAU (((...(((..((.((((....(((.(((((.......))))))))))))..)).((((((.((....------.-.((....))......))))))))...))).))).. ( -34.80) >consensus CACUUUCUCUAAGUGUAAGCCUGGAUCUGGUCCUAAGAUCCA__UUGCC___UCCCGCCCCUUCCUUUAUGGU_U_UUUGAGCAGCUGCAUGAGGGGCGG___________ ..............((((...(((((((.......)))))))..))))......(((((((((((.....)).........((....))..)))))))))........... (-20.70 = -22.32 + 1.61)
Location | 2,370,211 – 2,370,305 |
---|---|
Length | 94 |
Sequences | 6 |
Columns | 111 |
Reading direction | reverse |
Mean pairwise identity | 78.59 |
Mean single sequence MFE | -31.93 |
Consensus MFE | -18.80 |
Energy contribution | -19.30 |
Covariance contribution | 0.50 |
Combinations/Pair | 1.25 |
Mean z-score | -2.06 |
Structure conservation index | 0.59 |
SVM decision value | 0.88 |
SVM RNA-class probability | 0.873489 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 2370211 94 - 23771897 -----------CCGCCCCUCAUGCAGCUGCUCAAAAA-ACCAUAAAGGAAGGGGCGGGA---GGCAA--UGGAACUUAGGACCAGAUCCAGACUUACACUUAGAGAAAGUG -----------((((((((...((....)).......-.((.....)).))))))))((---(....--((((.((.......)).))))..))).(((((.....))))) ( -27.50) >DroSec_CAF1 118906 93 - 1 -----------CCGCCCCUCAUGCAGCUGCUCAAA-A-ACCAUAAAGGAAGGGGCGGGA---GGCAA--UGGGUCUUAGGACCAGAUCCAGACUUACACUUAGAGAAAGUG -----------((((((((...((....)).....-.-.((.....)).))))))))((---(....--(((((((.......)))))))..))).(((((.....))))) ( -31.50) >DroSim_CAF1 119989 93 - 1 -----------CCGCCCCUCAUGCAGCUGCUCAAA-A-ACCAUAAAGGAAGGGGCGGGA---GGCAA--UGGGUCUUAGGACCAGAUCCAGACUUACACUUAGAGAAAGUG -----------((((((((...((....)).....-.-.((.....)).))))))))((---(....--(((((((.......)))))))..))).(((((.....))))) ( -31.50) >DroEre_CAF1 126225 93 - 1 -----------CCGCCUCUCCUGCAGCUGCUCAAA-AAACCAU-AAGGAAGGGGCGGGA---GGCAA--UGGAUCUUAGGACCAGAUCCAGGCUUACACUUGAAGAAAGUA -----------(((((((((((.............-.......-.))).)))))))).(---(((..--(((((((.......))))))).))))..((((.....)))). ( -30.80) >DroYak_CAF1 123403 93 - 1 -----------CCGCCCCACCUACAGCUGCUCAGA-A-ACCAUAAAGGAAGGGGCGGGA---GGCAA--UGGAUCUUAGGACCAGAUCCAGGCUUACACUUGGAGGAAGUA -----------(((((((........((....)).-.-.((.....))..))))))).(---(((..--(((((((.......))))))).))))..((((.....)))). ( -30.00) >DroAna_CAF1 113552 104 - 1 AUCCUACUCCAUCGCCCCCCAAAAAGCUGCUCAGA-A------GAAGGGUGGGGCGGGGAGAUGCAGGCGGGAUCUUAGGUCCCAUCCCAGGGGCACACCGUGAGAAAAGG ..(((.((((.(((((((((......((....)).-.------....)).)))))))))))........(((((.....))))).((.((.((.....)).)).))..))) ( -40.30) >consensus ___________CCGCCCCUCAUGCAGCUGCUCAAA_A_ACCAUAAAGGAAGGGGCGGGA___GGCAA__UGGAUCUUAGGACCAGAUCCAGACUUACACUUAGAGAAAGUG ...........(((((((((...........................)).)))))))............(((((((.......)))))))..................... (-18.80 = -19.30 + 0.50)
Location | 2,370,245 – 2,370,337 |
---|---|
Length | 92 |
Sequences | 5 |
Columns | 94 |
Reading direction | forward |
Mean pairwise identity | 91.04 |
Mean single sequence MFE | -36.04 |
Consensus MFE | -33.68 |
Energy contribution | -33.76 |
Covariance contribution | 0.08 |
Combinations/Pair | 1.08 |
Mean z-score | -2.00 |
Structure conservation index | 0.93 |
SVM decision value | 2.97 |
SVM RNA-class probability | 0.997950 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 2370245 92 + 23771897 AAGUUCCAUUGCCUCCCGCCCCUUCCUUUAUGGU-UUUUUGAGCAGCUGCAUGAGGGGCGGGGAGUA-CAACGAGGUGGACUCCUUGUGGCUGU ..........((((((((((((((((.....)).-.......((....))..)))))))))))....-..((((((......)))))))))... ( -36.10) >DroSec_CAF1 118940 90 + 1 AAGACCCAUUGCCUCCCGCCCCUUCCUUUAUGGU-U-UUUGAGCAGCUGCAUGAGGGGCGGGGUGGACCAACGAGGUGGACUCCUUGUGGCU-- ..........(((..(((((((.(((((((((((-(-.......)))..))))))))).)))))))....((((((......))))))))).-- ( -36.30) >DroSim_CAF1 120023 90 + 1 AAGACCCAUUGCCUCCCGCCCCUUCCUUUAUGGU-U-UUUGAGCAGCUGCAUGAGGGGCGGGGUGGACCAACGAGGUGGACUCCUUGUGGCU-- ..........(((..(((((((.(((((((((((-(-.......)))..))))))))).)))))))....((((((......))))))))).-- ( -36.30) >DroEre_CAF1 126259 89 + 1 AAGAUCCAUUGCCUCCCGCCCCUUCCUU-AUGGUUU-UUUGAGCAGCUGCAGGAGAGGCGGGGUGU-CCAACAAGGUGGACUCCUUGUGGCU-- ..........((((((((((..(((((.-..((((.-.......))))..))))).)))))))...-...((((((......))))))))).-- ( -31.00) >DroYak_CAF1 123437 89 + 1 AAGAUCCAUUGCCUCCCGCCCCUUCCUUUAUGGU-U-UCUGAGCAGCUGUAGGUGGGGCGGGGAGU-CCAACGAGGUGGACUCCUUGUGGCA-- .........((((..(((((((..(((..(((((-(-.......))))))))).)))))))(((((-(((......))))))))....))))-- ( -40.50) >consensus AAGAUCCAUUGCCUCCCGCCCCUUCCUUUAUGGU_U_UUUGAGCAGCUGCAUGAGGGGCGGGGUGUACCAACGAGGUGGACUCCUUGUGGCU__ ..........((((((((((((((((.....)).........((....))..))))))))))).......((((((......)))))))))... (-33.68 = -33.76 + 0.08)
Location | 2,370,245 – 2,370,337 |
---|---|
Length | 92 |
Sequences | 5 |
Columns | 94 |
Reading direction | reverse |
Mean pairwise identity | 91.04 |
Mean single sequence MFE | -35.00 |
Consensus MFE | -31.66 |
Energy contribution | -31.54 |
Covariance contribution | -0.12 |
Combinations/Pair | 1.10 |
Mean z-score | -2.87 |
Structure conservation index | 0.90 |
SVM decision value | 4.42 |
SVM RNA-class probability | 0.999894 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 2370245 92 - 23771897 ACAGCCACAAGGAGUCCACCUCGUUG-UACUCCCCGCCCCUCAUGCAGCUGCUCAAAAA-ACCAUAAAGGAAGGGGCGGGAGGCAAUGGAACUU ...(((((((.(((.....))).)))-)....(((((((((...((....)).......-.((.....)).))))))))).))).......... ( -35.20) >DroSec_CAF1 118940 90 - 1 --AGCCACAAGGAGUCCACCUCGUUGGUCCACCCCGCCCCUCAUGCAGCUGCUCAAA-A-ACCAUAAAGGAAGGGGCGGGAGGCAAUGGGUCUU --.(((.(((.(((.....))).)))......(((((((((...((....)).....-.-.((.....)).))))))))).))).......... ( -34.30) >DroSim_CAF1 120023 90 - 1 --AGCCACAAGGAGUCCACCUCGUUGGUCCACCCCGCCCCUCAUGCAGCUGCUCAAA-A-ACCAUAAAGGAAGGGGCGGGAGGCAAUGGGUCUU --.(((.(((.(((.....))).)))......(((((((((...((....)).....-.-.((.....)).))))))))).))).......... ( -34.30) >DroEre_CAF1 126259 89 - 1 --AGCCACAAGGAGUCCACCUUGUUGG-ACACCCCGCCUCUCCUGCAGCUGCUCAAA-AAACCAU-AAGGAAGGGGCGGGAGGCAAUGGAUCUU --.(((.......(((((......)))-))..((((((((((((.............-.......-.))).))))))))).))).......... ( -33.50) >DroYak_CAF1 123437 89 - 1 --UGCCACAAGGAGUCCACCUCGUUGG-ACUCCCCGCCCCACCUACAGCUGCUCAGA-A-ACCAUAAAGGAAGGGGCGGGAGGCAAUGGAUCUU --((((....((((((((......)))-)))))(((((((........((....)).-.-.((.....))..)))))))..))))......... ( -37.70) >consensus __AGCCACAAGGAGUCCACCUCGUUGGUACACCCCGCCCCUCAUGCAGCUGCUCAAA_A_ACCAUAAAGGAAGGGGCGGGAGGCAAUGGAUCUU ...(((.(((.(((.....))).)))......((((((((....((....)).........((.....))..)))))))).))).......... (-31.66 = -31.54 + -0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:51:24 2006