| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 21,069,521 – 21,069,641 |
| Length | 120 |
| Max. P | 0.997623 |
| Location | 21,069,521 – 21,069,641 |
|---|---|
| Length | 120 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 97.75 |
| Mean single sequence MFE | -51.78 |
| Consensus MFE | -48.54 |
| Energy contribution | -48.58 |
| Covariance contribution | 0.04 |
| Combinations/Pair | 1.02 |
| Mean z-score | -2.12 |
| Structure conservation index | 0.94 |
| SVM decision value | 2.90 |
| SVM RNA-class probability | 0.997623 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 21069521 120 - 23771897 UGGCUUCGCUUACUUUGCGCAACGGCGCCAAUUUCUAGCUCCCGGCGGCGUGGAGCGCAGCGAAAGCGAUGAGAAAUUGGAGGGCGUGGGCGAGGAGGUGGACAUCAGCUACCUAAAGUC ...((((((((((...((((....))))((((((((.(((((((....)).)))))...((....))....))))))))......))))))))))((((((.(....)))))))...... ( -51.20) >DroSec_CAF1 124862 120 - 1 UGGCUUCGCUUACUUUGCGCAACGGCGCCAAUUUCUAGCUCCCGGCGGCGUGGAGCGCAGCGAAAGCGAUGAGAAGUUGGAGGGCGUCGGCGAGGAGGUGGACAUCAGCUACCUGAAGUC .((((((.....((((((.(.(((.(.(((((((((.(((((((....)).)))))...((....))....)))))))))..).))).)))))))((((((.(....))))))))))))) ( -53.40) >DroSim_CAF1 31102 120 - 1 UGGCUUCGCUUACUUUGCGCAACGGCGCCAAUUUCUAGCUCCCGGCGGCGUGGAGCGCAGCGAAAGCGAUGAGAAGUUGGAGGGCGUCGGCGAGGAGGUGGACAUCAGCUACCUGAAGUC .((((((.....((((((.(.(((.(.(((((((((.(((((((....)).)))))...((....))....)))))))))..).))).)))))))((((((.(....))))))))))))) ( -53.40) >DroEre_CAF1 47467 120 - 1 UGGCUUGGCUUACUUUGCGCAACGGCGCCAAUUUCUAGCUCCCGGCGGCGUGGAGCGCAGCGAAAGCGAUGAGAAGUUGGAGGGCGUUGGCGAGGAGGUGGACAUCAGCUACCUGAAGUC ......(((((.((((((.(((((.(.(((((((((.(((((((....)).)))))...((....))....)))))))))..).)))))))))))((((((.(....))))))).))))) ( -54.00) >DroYak_CAF1 17889 120 - 1 UGGCUUGGCUUACUUUGCGCAACGGCGCCAAUUUCUAGCUCCCGGCGGCGUGGAGCGCAGCGAAAGCGAUGAGAAGUUGGAGGGCGUCGGCGAGGAGGUGGACAUCAGCUACCUAAAAUC ............((((((.(.(((.(.(((((((((.(((((((....)).)))))...((....))....)))))))))..).))).)))))))((((((.(....)))))))...... ( -46.90) >consensus UGGCUUCGCUUACUUUGCGCAACGGCGCCAAUUUCUAGCUCCCGGCGGCGUGGAGCGCAGCGAAAGCGAUGAGAAGUUGGAGGGCGUCGGCGAGGAGGUGGACAUCAGCUACCUGAAGUC .(((((......((((((.(.(((.(.(((((((((.(((((((....)).)))))...((....))....)))))))))..).))).)))))))((((((.(....))))))).))))) (-48.54 = -48.58 + 0.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:01:24 2006