Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 21,069,208 – 21,069,328 |
Length | 120 |
Max. P | 0.931438 |
Location | 21,069,208 – 21,069,328 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 96.00 |
Mean single sequence MFE | -36.90 |
Consensus MFE | -34.54 |
Energy contribution | -33.82 |
Covariance contribution | -0.72 |
Combinations/Pair | 1.11 |
Mean z-score | -1.42 |
Structure conservation index | 0.94 |
SVM decision value | 1.21 |
SVM RNA-class probability | 0.931438 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 21069208 120 - 23771897 GUUCGACGGGCUUACAGGCGCAUGGUUCUGCUGCACCAUCCCGAUAAGCGGAAAGCCAAGGGCGAGGAAGUCAUCCAGGACGAUGAUUACUUCACAUGCAUAACCAAAGCUUACGAGAUA .((((..((((((...((.(((((.(((((((.(........)...))))))).(((...)))((((.(((((((......))))))).)))).)))))....)).)))))).))))... ( -35.90) >DroSec_CAF1 124548 120 - 1 AUUCGACGGGCUUACAGGCGCAUGGUCCUGCUGCAUCAUCCCGAUAAGCGGAAAGCCAAGGGCGAGGAAGUCAUUCAGGACGACGACUACUUCACAUGCAUAACCAAAGCUUACGAGAUA .((((..((((((...((.(((((((((((((..(((.....))).)))((....)).)))))((((.((((..((.....)).)))).)))).)))))....)).)))))).))))... ( -35.00) >DroSim_CAF1 30788 120 - 1 AUUCGACGGGCUUACAGGCGCAUGGUCCUGCUGCACCAUCCCGAUAAGCGGAAAGCCAAGGGCGAGGAAGUCAUCCAGGACGACGACUACUUCACAUGCAUAACCAAAGCUUACGAGAUA .((((..((((((...((.((((((((((...((....((((.....).)))..))..)))))((((.((((.((......)).)))).)))).)))))....)).)))))).))))... ( -34.70) >DroEre_CAF1 47151 120 - 1 AUUCGACGGGCUUAUAGACGCAUGGUCCUGCUGCAUCAUCCCGAUAAGCGGAAAGCCAAGGGCGAGGAAGUCAUCCAGGACGACGACUACUUCACAUGCAUAACCAAAGCCUACGAGAUA .((((..((((((......(((((((((((((..(((.....))).)))((....)).)))))((((.((((.((......)).)))).)))).))))).......)))))).))))... ( -38.72) >DroYak_CAF1 17573 120 - 1 AUUCGACGGGCUUAUAGACGCAUGGUCCUGCUGCAUCAUCCCGAUAAGCGGAAAGCCAAGGGCGAGGAAGUCAUCCAGGACGACGACUACUUCACAUGCAUAACUAAAGCCUACGAGAUA .((((..((((((.(((..(((((((((((((..(((.....))).)))((....)).)))))((((.((((.((......)).)))).)))).)))))....))))))))).))))... ( -40.20) >consensus AUUCGACGGGCUUACAGGCGCAUGGUCCUGCUGCAUCAUCCCGAUAAGCGGAAAGCCAAGGGCGAGGAAGUCAUCCAGGACGACGACUACUUCACAUGCAUAACCAAAGCUUACGAGAUA .((((..((((((......((((((((((...((....((((.....).)))..))..)))))((((.((((.((......)).)))).)))).))))).......)))))).))))... (-34.54 = -33.82 + -0.72)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:01:23 2006