Locus 7936

Sequence ID 3L_DroMel_CAF1
Location 21,068,216 – 21,068,336
Length 120
Max. P 0.991485
window12942

overview

Window 2

Location 21,068,216 – 21,068,336
Length 120
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 97.17
Mean single sequence MFE -40.72
Consensus MFE -38.92
Energy contribution -39.52
Covariance contribution 0.60
Combinations/Pair 1.00
Mean z-score -1.75
Structure conservation index 0.96
SVM decision value 2.27
SVM RNA-class probability 0.991485
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 21068216 120 + 23771897
CUUUUCAGCCUUCUCCUUGGCCAAAGCCGCUUCACGGAUGGCACGAUCAGCUUCUGCCUUCUGGGCCUGGGCGGCGUCCAUCUUGGCUCGCUUGGCAGCAGCCUUGCGAUCCUUUUCCUC
.......(((........)))....(((((((..((((.((((.((......)))))).)))).....))))))).........((.((((..(((....)))..)))).))........ ( -42.40)
>DroSec_CAF1 123536 119 + 1
CUUUUCAGCCUUCUCCUUGGCCAAAGCCGCUUCACGGAUGGCUCGAUCAGCUUCUGCCUUCUGGGCCUGGGCGGCGUCCAUCUUGGCUCGCUUGGCAGCAGCCUUGCGAUCCUU-UCCUC
.......(((........)))....(((((((..((((.(((..((......)).))).)))).....))))))).........((.((((..(((....)))..)))).))..-..... ( -40.30)
>DroSim_CAF1 29785 120 + 1
CUUUUCAGCCUUCUCCUUGGCCAAAGCCGCUUCACGGAUGGCUCGAUCAGCUUCUGCCUUCUGGGCCUGGGCGGCGUCCAUCUUGGCUCGCUUGGCAGCAGCCUUGCGAUCCUUUUCCUC
.......(((........)))....(((((((..((((.(((..((......)).))).)))).....))))))).........((.((((..(((....)))..)))).))........ ( -40.30)
>DroEre_CAF1 46159 120 + 1
CUUUUCAGCCUUCUCUUUGGCCAAAGCCGCUUCACGGAUGGCACGAUCAGCUUCUGCCUUCUGGGCCUGGGCGGCGUCCAUUUUAGCUCGCUUGGCCGCAGCCUUGCGAUCCUUCUCCUC
.......(((........)))....(((((((..((((.((((.((......)))))).)))).....)))))))............((((..(((....)))..))))........... ( -38.70)
>DroYak_CAF1 16619 120 + 1
CUUUUCAGCCUUCUCUUUGGCCAAAGCCGCUUCACGGAUGGCACGAUCAGCUUCUGCCUUCUGGGCCUGGGCGGCGUCCAUCUUGGCUCGCUUGGCCGCAGCCUUGCGAUCCUUCUCCUC
.......(((........)))....(((((((..((((.((((.((......)))))).)))).....))))))).........((.((((..(((....)))..)))).))........ ( -41.90)
>consensus
CUUUUCAGCCUUCUCCUUGGCCAAAGCCGCUUCACGGAUGGCACGAUCAGCUUCUGCCUUCUGGGCCUGGGCGGCGUCCAUCUUGGCUCGCUUGGCAGCAGCCUUGCGAUCCUUCUCCUC
.......(((........)))....(((((((..((((.((((.((......)))))).)))).....))))))).........((.((((..(((....)))..)))).))........ (-38.92 = -39.52 +   0.60)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:01:22 2006